RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 TNS3Q68CZ2 1445 aa11□□□□□ -0.65
TRIM55-204ENST00000353317 SOS2Q07890 1332 aaPredicted RBP11□□□□□ -0.65
TRIM55-204ENST00000353317 ARHGEF10O15013 1369 aa11□□□□□ -0.65
TRIM55-204ENST00000353317 IGHDP01880 384 aa11□□□□□ -0.65
TRIM55-204ENST00000353317 MTHFSDQ2M296 383 aaKnown RBP11□□□□□ -0.65
TRIM55-204ENST00000353317 KIF24Q5T7B8 1368 aa10.99□□□□□ -0.65
TRIM55-204ENST00000353317 PNNQ9H307 717 aaKnown RBP10.99□□□□□ -0.65
TRIM55-204ENST00000353317 CHRNA2Q15822 529 aa10.99□□□□□ -0.65
TRIM55-204ENST00000353317 RTL1A6NKG5 1358 aa10.99□□□□□ -0.65
TRIM55-204ENST00000353317 MCM10Q7L590 875 aa10.98□□□□□ -0.65
TRIM55-204ENST00000353317 NHSL1Q5SYE7 1610 aa10.98□□□□□ -0.65
TRIM55-204ENST00000353317 EXOSC9Q06265 439 aaKnown RBP10.97□□□□□ -0.65
TRIM55-204ENST00000353317 FRAT1Q92837 279 aaPredicted RBP10.97□□□□□ -0.65
TRIM55-204ENST00000353317 BCL2L13Q9BXK5 485 aa10.97□□□□□ -0.65
TRIM55-204ENST00000353317 ZNF853P0CG23 659 aa10.96□□□□□ -0.65
TRIM55-204ENST00000353317 ANKRD24Q8TF21 1146 aa10.96□□□□□ -0.65
TRIM55-204ENST00000353317 BRPF3Q9ULD4 1205 aa10.96□□□□□ -0.65
TRIM55-204ENST00000353317 TNNQ9UQP3 1299 aa10.96□□□□□ -0.65
TRIM55-204ENST00000353317 ROBO1Q9Y6N7 1651 aa10.96□□□□□ -0.65
TRIM55-204ENST00000353317 KIAA0232Q92628 1395 aa10.96□□□□□ -0.66
TRIM55-204ENST00000353317 FRAT2O75474 233 aaPredicted RBP10.96□□□□□ -0.66
TRIM55-204ENST00000353317 PDE3AQ14432 1141 aa10.96□□□□□ -0.66
TRIM55-204ENST00000353317 ANO8Q9HCE9 1232 aaPredicted RBP10.96□□□□□ -0.66
TRIM55-204ENST00000353317 RARSP54136 660 aaKnown RBP10.95□□□□□ -0.66
TRIM55-204ENST00000353317 PANK1Q8TE04 598 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 ABCA3Q99758 1704 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 TSPYL6Q8N831 410 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 CLUAP1Q96AJ1 413 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 MBIPQ9NS73 344 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 COG6Q9Y2V7 657 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 IL16Q14005 1332 aa10.95□□□□□ -0.66
TRIM55-204ENST00000353317 ERBB3P21860 1342 aa10.94□□□□□ -0.66
TRIM55-204ENST00000353317 SEC24BO95487 1268 aa10.94□□□□□ -0.66
TRIM55-204ENST00000353317 KRT24Q2M2I5 525 aa10.94□□□□□ -0.66
TRIM55-204ENST00000353317 MYH16Q9H6N6 1097 aa10.94□□□□□ -0.66
TRIM55-204ENST00000353317 MIS18AQ9NYP9 233 aa10.94□□□□□ -0.66
TRIM55-204ENST00000353317 CRB1P82279 1406 aa10.93□□□□□ -0.66
TRIM55-204ENST00000353317 NCAPD2Q15021 1401 aa10.93□□□□□ -0.66
TRIM55-204ENST00000353317 CAMTA1Q9Y6Y1 1673 aa10.93□□□□□ -0.66
TRIM55-204ENST00000353317 LMO7Q8WWI1 1683 aa10.93□□□□□ -0.66
TRIM55-204ENST00000353317 ELL2O00472 640 aaPredicted RBP10.92□□□□□ -0.66
TRIM55-204ENST00000353317 CANXP27824 592 aaKnown RBP10.92□□□□□ -0.66
TRIM55-204ENST00000353317 IL17REQ8NFR9 667 aa10.92□□□□□ -0.66
TRIM55-204ENST00000353317 VIRMAQ69YN4 1812 aaKnown RBP10.92□□□□□ -0.66
TRIM55-204ENST00000353317 C8orf58Q8NAV2 365 aa10.92□□□□□ -0.66
TRIM55-204ENST00000353317 FAM208AQ9UK61 1670 aaKnown RBP10.92□□□□□ -0.66
TRIM55-204ENST00000353317 CFAP44Q96MT7 982 aa10.91□□□□□ -0.66
TRIM55-204ENST00000353317 SSH1Q8WYL5 1049 aa10.91□□□□□ -0.66
TRIM55-204ENST00000353317 LGR6Q9HBX8 967 aa10.91□□□□□ -0.66
TRIM55-204ENST00000353317 IFT57Q9NWB7 429 aa10.91□□□□□ -0.66
TRIM55-204ENST00000353317 CPDO75976 1380 aa10.91□□□□□ -0.66
TRIM55-204ENST00000353317 RLBP1P12271 317 aa10.9□□□□□ -0.66
TRIM55-204ENST00000353317 CHL1O00533 1208 aa10.9□□□□□ -0.66
TRIM55-204ENST00000353317 VAMP4O75379 141 aa10.9□□□□□ -0.66
TRIM55-204ENST00000353317 GNAI1P63096 354 aa10.89□□□□□ -0.67
TRIM55-204ENST00000353317 NLRP2Q9NX02 1062 aa10.89□□□□□ -0.67
TRIM55-204ENST00000353317 PCDHB15Q9Y5E8 787 aa10.89□□□□□ -0.67
TRIM55-204ENST00000353317 LRRC37A3O60309 1634 aa10.89□□□□□ -0.67
TRIM55-204ENST00000353317 GNAT3A8MTJ3 354 aa10.88□□□□□ -0.67
TRIM55-204ENST00000353317 PIP4K2BP78356 416 aa10.88□□□□□ -0.67
TRIM55-204ENST00000353317 LMOD3Q0VAK6 560 aa10.88□□□□□ -0.67
TRIM55-204ENST00000353317 AEBP2Q6ZN18 517 aaPredicted RBP10.88□□□□□ -0.67
TRIM55-204ENST00000353317 GAS2L2Q8NHY3 880 aa10.88□□□□□ -0.67
TRIM55-204ENST00000353317 PRDM11Q9NQV5 511 aa10.88□□□□□ -0.67
TRIM55-204ENST00000353317 MEGF6O75095 1541 aa10.88□□□□□ -0.67
TRIM55-204ENST00000353317 AHDC1Q5TGY3 1603 aaPredicted RBP10.88□□□□□ -0.67
TRIM55-204ENST00000353317 MAP3K5Q99683 1374 aa10.87□□□□□ -0.67
TRIM55-204ENST00000353317 MPRIPQ6WCQ1 1025 aa10.87□□□□□ -0.67
TRIM55-204ENST00000353317 COL16A1Q07092 1604 aaPredicted RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 RTF1Q92541 710 aaKnown RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 COL5A2P05997 1499 aaPredicted RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 PHLPP1O60346 1717 aa10.86□□□□□ -0.67
TRIM55-204ENST00000353317 CSB-PGBD3P0DP91 1061 aa10.86□□□□□ -0.67
TRIM55-204ENST00000353317 TWISTNBQ3B726 338 aaPredicted RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 ZNF530Q6P9A1 599 aaPredicted RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 SLKQ9H2G2 1235 aaPredicted RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 SMC4Q9NTJ3 1288 aa10.86□□□□□ -0.67
TRIM55-204ENST00000353317 NOB1Q9ULX3 412 aaKnown RBP10.86□□□□□ -0.67
TRIM55-204ENST00000353317 CEMIPQ8WUJ3 1361 aa10.85□□□□□ -0.67
TRIM55-204ENST00000353317 KCNQ3O43525 872 aa10.85□□□□□ -0.67
TRIM55-204ENST00000353317 HAP1P54257 671 aaPredicted RBP10.85□□□□□ -0.67
TRIM55-204ENST00000353317 CALD1Q05682 793 aaKnown RBP10.85□□□□□ -0.67
TRIM55-204ENST00000353317 LARP1Q6PKG0 1096 aaKnown RBP10.85□□□□□ -0.67
TRIM55-204ENST00000353317 AAMPQ13685 434 aa10.85□□□□□ -0.67
TRIM55-204ENST00000353317 BECN1Q14457 450 aa10.85□□□□□ -0.67
TRIM55-204ENST00000353317 PDZRN3Q9UPQ7 1066 aa10.85□□□□□ -0.67
TRIM55-204ENST00000353317 HTATSF1O43719 755 aaKnown RBP10.84□□□□□ -0.67
TRIM55-204ENST00000353317 CT47B1P0C2W7 299 aaPredicted RBP10.84□□□□□ -0.67
TRIM55-204ENST00000353317 TRIM27P14373 513 aa10.84□□□□□ -0.67
TRIM55-204ENST00000353317 STRN4Q9NRL3 753 aa10.84□□□□□ -0.67
TRIM55-204ENST00000353317 ABCC6O95255 1503 aa10.84□□□□□ -0.67
TRIM55-204ENST00000353317 PLEKHO1Q53GL0 409 aaPredicted RBP10.84□□□□□ -0.67
TRIM55-204ENST00000353317 MRPL50Q8N5N7 158 aaKnown RBP10.84□□□□□ -0.67
TRIM55-204ENST00000353317 ANTXR1Q9H6X2 564 aa10.84□□□□□ -0.67
TRIM55-204ENST00000353317 TSPYL4Q9UJ04 414 aa10.84□□□□□ -0.67
TRIM55-204ENST00000353317 COL22A1Q8NFW1 1626 aaPredicted RBP10.83□□□□□ -0.67
TRIM55-204ENST00000353317 WDR17Q8IZU2 1322 aa10.83□□□□□ -0.68
TRIM55-204ENST00000353317 CYP27B1O15528 508 aa10.83□□□□□ -0.68
TRIM55-204ENST00000353317 AKAP4Q5JQC9 854 aa10.83□□□□□ -0.68
TRIM55-204ENST00000353317 TBC1D32Q96NH3 1257 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms