RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MARF1Q9Y4F3 1742 aaKnown RBP12.03□□□□□ -0.48
USP4-202ENST00000351842 COL3A1P02461 1466 aaPredicted RBP12.03□□□□□ -0.48
USP4-202ENST00000351842 SPATA31A6Q5VVP1 1343 aa12.03□□□□□ -0.48
USP4-202ENST00000351842 ZNF428Q96B54 188 aa12.03□□□□□ -0.48
USP4-202ENST00000351842 PNNQ9H307 717 aaKnown RBP12.03□□□□□ -0.48
USP4-202ENST00000351842 ZCRB1Q8TBF4 217 aaKnown RBP12.02□□□□□ -0.48
USP4-202ENST00000351842 COL5A2P05997 1499 aaPredicted RBP12.02□□□□□ -0.48
USP4-202ENST00000351842 EXOC5O00471 708 aa12.02□□□□□ -0.49
USP4-202ENST00000351842 TEFQ10587 303 aa12.02□□□□□ -0.49
USP4-202ENST00000351842 SLC39A6Q13433 755 aa12.02□□□□□ -0.49
USP4-202ENST00000351842 DDB1Q16531 1140 aa12.02□□□□□ -0.49
USP4-202ENST00000351842 SLIT3O75094 1523 aa12.02□□□□□ -0.49
USP4-202ENST00000351842 CPDO75976 1380 aa12.02□□□□□ -0.49
USP4-202ENST00000351842 PHRF1Q9P1Y6 1649 aaKnown RBP12.02□□□□□ -0.49
USP4-202ENST00000351842 PDE3BQ13370 1112 aa12.01□□□□□ -0.49
USP4-202ENST00000351842 RTL1A6NKG5 1358 aa12.01□□□□□ -0.49
USP4-202ENST00000351842 GOLGA2Q08379 1002 aa12.01□□□□□ -0.49
USP4-202ENST00000351842 CARD10Q9BWT7 1032 aa12.01□□□□□ -0.49
USP4-202ENST00000351842 GNAT3A8MTJ3 354 aa12.01□□□□□ -0.49
USP4-202ENST00000351842 TRIM35Q9UPQ4 493 aa12.01□□□□□ -0.49
USP4-202ENST00000351842 CYP27B1O15528 508 aa12□□□□□ -0.49
USP4-202ENST00000351842 GAS2L2Q8NHY3 880 aa12□□□□□ -0.49
USP4-202ENST00000351842 ARXQ96QS3 562 aa12□□□□□ -0.49
USP4-202ENST00000351842 ZNF330Q9Y3S2 320 aaPredicted RBP12□□□□□ -0.49
USP4-202ENST00000351842 BLMP54132 1417 aaPredicted RBP12□□□□□ -0.49
USP4-202ENST00000351842 PTCD1O75127 700 aaKnown RBP12□□□□□ -0.49
USP4-202ENST00000351842 SPG7Q9UQ90 795 aa12□□□□□ -0.49
USP4-202ENST00000351842 MEGF6O75095 1541 aa12□□□□□ -0.49
USP4-202ENST00000351842 NFATC2IPQ8NCF5 419 aa11.99□□□□□ -0.49
USP4-202ENST00000351842 KCNQ4P56696 695 aa11.99□□□□□ -0.49
USP4-202ENST00000351842 ZBED9Q6R2W3 1325 aa11.99□□□□□ -0.49
USP4-202ENST00000351842 IL17REQ8NFR9 667 aa11.99□□□□□ -0.49
USP4-202ENST00000351842 SPATA31A1Q5TZJ5 1347 aa11.98□□□□□ -0.49
USP4-202ENST00000351842 GJD4Q96KN9 370 aaPredicted RBP11.98□□□□□ -0.49
USP4-202ENST00000351842 TSPYL4Q9UJ04 414 aa11.98□□□□□ -0.49
USP4-202ENST00000351842 IQSEC2Q5JU85 1478 aa11.98□□□□□ -0.49
USP4-202ENST00000351842 SHPRHQ149N8 1683 aa11.98□□□□□ -0.49
USP4-202ENST00000351842 KCNQ3O43525 872 aa11.98□□□□□ -0.49
USP4-202ENST00000351842 TRPC5Q9UL62 973 aaPredicted RBP11.98□□□□□ -0.49
USP4-202ENST00000351842 CRB1P82279 1406 aa11.98□□□□□ -0.49
USP4-202ENST00000351842 PIP4K2AP48426 406 aaPredicted RBP11.98□□□□□ -0.49
USP4-202ENST00000351842 SUPT16HQ9Y5B9 1047 aaKnown RBP11.98□□□□□ -0.49
USP4-202ENST00000351842 EIF2S2P20042 333 aaKnown RBP11.97□□□□□ -0.49
USP4-202ENST00000351842 SEPT12Q8IYM1 358 aa11.97□□□□□ -0.49
USP4-202ENST00000351842 IFNL2Q8IZJ0 200 aa11.97□□□□□ -0.49
USP4-202ENST00000351842 NGEFQ8N5V2 710 aa11.97□□□□□ -0.49
USP4-202ENST00000351842 PLIN1O60240 522 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 CABP4P57796 275 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 PTF1AQ7RTS3 328 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 FRAT1Q92837 279 aaPredicted RBP11.96□□□□□ -0.49
USP4-202ENST00000351842 SPATA31A5Q5VU36 1347 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 SPATA31A7Q8IWB4 1347 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 KCNQ2O43526 872 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 EXOSC9Q06265 439 aaKnown RBP11.96□□□□□ -0.49
USP4-202ENST00000351842 POTEAQ6S8J7 498 aa11.96□□□□□ -0.49
USP4-202ENST00000351842 FNBP4Q8N3X1 1017 aaPredicted RBP11.96□□□□□ -0.49
USP4-202ENST00000351842 BCL9LQ86UU0 1499 aa11.96□□□□□ -0.5
USP4-202ENST00000351842 PHKG2P15735 406 aa11.96□□□□□ -0.5
USP4-202ENST00000351842 PRIM1P49642 420 aaKnown RBP11.96□□□□□ -0.5
USP4-202ENST00000351842 RBM42Q9BTD8 480 aaKnown RBP11.96□□□□□ -0.5
USP4-202ENST00000351842 KIF24Q5T7B8 1368 aa11.95□□□□□ -0.5
USP4-202ENST00000351842 UTRNP46939 3433 aa11.95□□□□□ -0.5
USP4-202ENST00000351842 AMOTQ4VCS5 1084 aa11.95□□□□□ -0.5
USP4-202ENST00000351842 BTBD11A6QL63 1104 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 VPS72Q15906 364 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 MAP3K5Q99683 1374 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 ANXA1P04083 346 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 CANXP27824 592 aaKnown RBP11.94□□□□□ -0.5
USP4-202ENST00000351842 TSPYL6Q8N831 410 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 MBIPQ9NS73 344 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 KDRP35968 1356 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 LMOD3Q0VAK6 560 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 AKAP4Q5JQC9 854 aa11.94□□□□□ -0.5
USP4-202ENST00000351842 MARCH10Q8NA82 808 aaPredicted RBP11.94□□□□□ -0.5
USP4-202ENST00000351842 ABCA3Q99758 1704 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 PRAMEF22A3QJZ6 481 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 RNMTO43148 476 aaKnown RBP11.93□□□□□ -0.5
USP4-202ENST00000351842 RXRBP28702 533 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 CLUAP1Q96AJ1 413 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 PCDH11XQ9BZA7 1347 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 PCDH11YQ9BZA8 1340 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 FANCIQ9NVI1 1328 aa11.93□□□□□ -0.5
USP4-202ENST00000351842 TMOD3Q9NYL9 352 aa11.92□□□□□ -0.5
USP4-202ENST00000351842 TTC5Q8N0Z6 440 aa11.92□□□□□ -0.5
USP4-202ENST00000351842 RGS17Q9UGC6 210 aaPredicted RBP11.92□□□□□ -0.5
USP4-202ENST00000351842 BCAR3O75815 825 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 ZNF772Q68DY9 489 aaPredicted RBP11.91□□□□□ -0.5
USP4-202ENST00000351842 C8orf58Q8NAV2 365 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 MYH16Q9H6N6 1097 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 ASAP1Q9ULH1 1129 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 E9PSI1 815 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 TRIM37O94972 964 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 SLFN5Q08AF3 891 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 SLIT2O94813 1529 aa11.91□□□□□ -0.5
USP4-202ENST00000351842 COL18A1P39060 1754 aa11.9□□□□□ -0.5
USP4-202ENST00000351842 DUSP27Q5VZP5 1158 aa11.9□□□□□ -0.5
USP4-202ENST00000351842 CRYBG1Q9Y4K1 1723 aa11.9□□□□□ -0.5
USP4-202ENST00000351842 GNAI1P63096 354 aa11.9□□□□□ -0.51
USP4-202ENST00000351842 TAF7Q15545 349 aaPredicted RBP11.9□□□□□ -0.51
USP4-202ENST00000351842 SMIM5Q71RC9 77 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms