RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 BCL2L12Q9HB09 334 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 EVC2Q86UK5 1308 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 ATP10DQ9P241 1426 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 FANCAO15360 1455 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 DIAPH1O60610 1272 aaKnown RBP8.28□□□□□ -1.08
VPS39-202ENST00000348544 FGD1P98174 961 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 POTEDQ86YR6 584 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 GTPBP4Q9BZE4 634 aaKnown RBP8.28□□□□□ -1.08
VPS39-202ENST00000348544 SPTLC3Q9NUV7 552 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 USP25Q9UHP3 1055 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 PNPLA6Q8IY17 1366 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 FAM135BQ49AJ0 1406 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 FYB1O15117 783 aa8.27□□□□□ -1.08
VPS39-202ENST00000348544 SMARCA5O60264 1052 aaPredicted RBP8.27□□□□□ -1.08
VPS39-202ENST00000348544 CHGAP10645 457 aaKnown RBP8.27□□□□□ -1.08
VPS39-202ENST00000348544 FKBP5Q13451 457 aaPredicted RBP8.27□□□□□ -1.08
VPS39-202ENST00000348544 PUS7Q96PZ0 661 aaKnown RBP8.27□□□□□ -1.08
VPS39-202ENST00000348544 GDPD2Q9HCC8 539 aa8.27□□□□□ -1.08
VPS39-202ENST00000348544 ANKRD26Q9UPS8 1709 aa8.27□□□□□ -1.09
VPS39-202ENST00000348544 PRKAR2BP31323 418 aa8.27□□□□□ -1.09
VPS39-202ENST00000348544 PHACTR3Q96KR7 559 aa8.27□□□□□ -1.09
VPS39-202ENST00000348544 CFAP44Q96MT7 982 aa8.27□□□□□ -1.09
VPS39-202ENST00000348544 KIF3AQ9Y496 699 aa8.27□□□□□ -1.09
VPS39-202ENST00000348544 CDC42BPGQ6DT37 1551 aa8.27□□□□□ -1.09
VPS39-202ENST00000348544 SPDYE4A6NLX3 237 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 ZCCHC11Q5TAX3 1644 aaKnown RBP8.26□□□□□ -1.09
VPS39-202ENST00000348544 MBIPQ9NS73 344 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 CAMSAP1Q5T5Y3 1602 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 KIF20AO95235 890 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 NEK4P51957 841 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 CUL4AQ13619 759 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 SAFB2Q14151 953 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS39-202ENST00000348544 FOXD4L6Q3SYB3 417 aaPredicted RBP8.26□□□□□ -1.09
VPS39-202ENST00000348544 FOXD4L3Q6VB84 417 aaPredicted RBP8.26□□□□□ -1.09
VPS39-202ENST00000348544 CD163L1Q9NR16 1453 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 ERC2O15083 957 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 FCHSD2O94868 740 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 REC8O95072 547 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 ADCY5O95622 1261 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 ZNF853P0CG23 659 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 C8orf58Q8NAV2 365 aa8.26□□□□□ -1.09
VPS39-202ENST00000348544 ARHGEF40Q8TER5 1519 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 APBB1O00213 710 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 LETM1O95202 739 aaPredicted RBP8.25□□□□□ -1.09
VPS39-202ENST00000348544 UVSSAQ2YD98 709 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 TWISTNBQ3B726 338 aaPredicted RBP8.25□□□□□ -1.09
VPS39-202ENST00000348544 ANKRD44Q8N8A2 993 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 SYAP1Q96A49 352 aaPredicted RBP8.25□□□□□ -1.09
VPS39-202ENST00000348544 PALD1Q9ULE6 856 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 FBLN1P23142 703 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 U2AF2P26368 475 aaKnown RBP eCLIP8.25□□□□□ -1.091e-6■□□□□ 10.5
VPS39-202ENST00000348544 NFE2L2Q16236 605 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 USP48Q86UV5 1035 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 PDCL2Q8N4E4 241 aa8.25□□□□□ -1.09
VPS39-202ENST00000348544 RGS12O14924 1447 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 AP5Z1O43299 807 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 IGSF3O75054 1194 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 HCLS1P14317 486 aaPredicted RBP8.24□□□□□ -1.09
VPS39-202ENST00000348544 CEP85Q6P2H3 762 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 CASC1Q6TDU7 716 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 NOL8Q76FK4 1167 aaKnown RBP8.24□□□□□ -1.09
VPS39-202ENST00000348544 FAM184AQ8NB25 1140 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 ANKRD7Q92527 254 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 API5Q9BZZ5 524 aaKnown RBP8.24□□□□□ -1.09
VPS39-202ENST00000348544 KCNF1Q9H3M0 494 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 IFT57Q9NWB7 429 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 PYCARDQ9ULZ3 195 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 KIF24Q5T7B8 1368 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 LMTK2Q8IWU2 1503 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 RIOK3O14730 519 aaKnown RBP8.24□□□□□ -1.09
VPS39-202ENST00000348544 HMOX1P09601 288 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 KRT24Q2M2I5 525 aa8.24□□□□□ -1.09
VPS39-202ENST00000348544 NUTM2DQ5VT03 806 aaPredicted RBP8.24□□□□□ -1.09
VPS39-202ENST00000348544 ARAP3Q8WWN8 1544 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 PHF14O94880 888 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 GNAI1P63096 354 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 KIAA1524Q8TCG1 905 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 RTL1A6NKG5 1358 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 TCHHQ07283 1943 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 GTF2E1P29083 439 aaPredicted RBP8.23□□□□□ -1.09
VPS39-202ENST00000348544 NPATQ14207 1427 aa8.23□□□□□ -1.09
VPS39-202ENST00000348544 CFAP65Q6ZU64 1925 aaKnown RBP8.22□□□□□ -1.09
VPS39-202ENST00000348544 CTIFO43310 598 aaKnown RBP8.22□□□□□ -1.09
VPS39-202ENST00000348544 SRPK2P78362 688 aaKnown RBP8.22□□□□□ -1.09
VPS39-202ENST00000348544 INTS4Q96HW7 963 aaKnown RBP8.22□□□□□ -1.09
VPS39-202ENST00000348544 MSH6P52701 1360 aa8.22□□□□□ -1.09
VPS39-202ENST00000348544 RPAP1Q9BWH6 1393 aaPredicted RBP8.22□□□□□ -1.09
VPS39-202ENST00000348544 ZFYVE9O95405 1425 aa8.22□□□□□ -1.09
VPS39-202ENST00000348544 KDM4AO75164 1064 aa8.22□□□□□ -1.09
VPS39-202ENST00000348544 CCDC183Q5T5S1 534 aa8.22□□□□□ -1.09
VPS39-202ENST00000348544 TMEM87AQ8NBN3 555 aa8.22□□□□□ -1.09
VPS39-202ENST00000348544 ABCC3O15438 1527 aa8.22□□□□□ -1.09
VPS39-202ENST00000348544 MCM2P49736 904 aa8.21□□□□□ -1.09
VPS39-202ENST00000348544 PDE1AP54750 535 aa8.21□□□□□ -1.09
VPS39-202ENST00000348544 TSHZ3Q63HK5 1081 aa8.21□□□□□ -1.09
VPS39-202ENST00000348544 RPAP2Q8IXW5 612 aaPredicted RBP8.21□□□□□ -1.09
VPS39-202ENST00000348544 FUCA2Q9BTY2 467 aa8.21□□□□□ -1.09
VPS39-202ENST00000348544 SRCIN1Q9C0H9 1055 aa8.21□□□□□ -1.09
VPS39-202ENST00000348544 CNPY2Q9Y2B0 182 aa8.21□□□□□ -1.09
VPS39-202ENST00000348544 TUBGCP6Q96RT7 1819 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms