RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 SPON1Q9HCB6 807 aa27.63■■■□□ 2.01
SYNE2-201ENST00000341472 SLC15A2Q16348 729 aa27.62■■■□□ 2.01
SYNE2-201ENST00000341472 MORC1Q86VD1 984 aa27.62■■■□□ 2.01
SYNE2-201ENST00000341472 EYA1Q99502 592 aa27.61■■■□□ 2.01
SYNE2-201ENST00000341472 RREB1Q92766 1687 aa27.61■■■□□ 2.01
SYNE2-201ENST00000341472 FAM208AQ9UK61 1670 aaKnown RBP27.6■■■□□ 2.01
SYNE2-201ENST00000341472 KIF7Q2M1P5 1343 aa27.6■■■□□ 2.01
SYNE2-201ENST00000341472 KIF20BQ96Q89 1820 aa27.59■■■□□ 2.01
SYNE2-201ENST00000341472 NUP188Q5SRE5 1749 aa27.58■■■□□ 2.01
SYNE2-201ENST00000341472 NSD2O96028 1365 aa27.58■■■□□ 2.01
SYNE2-201ENST00000341472 LRP5O75197 1615 aa27.57■■■□□ 2
SYNE2-201ENST00000341472 EIF4A2Q14240 407 aaKnown RBP27.57■■■□□ 2
SYNE2-201ENST00000341472 SLC27A3Q5K4L6 730 aa27.57■■■□□ 2
SYNE2-201ENST00000341472 PCDH11XQ9BZA7 1347 aa27.57■■■□□ 2
SYNE2-201ENST00000341472 PCDH11YQ9BZA8 1340 aa27.57■■■□□ 2
SYNE2-201ENST00000341472 PDGFDQ9GZP0 370 aaPredicted RBP27.56■■■□□ 2
SYNE2-201ENST00000341472 LRRC4BQ9NT99 713 aa27.56■■■□□ 2
SYNE2-201ENST00000341472 SPG7Q9UQ90 795 aa27.56■■■□□ 2
SYNE2-201ENST00000341472 CYP27B1O15528 508 aa27.55■■■□□ 2
SYNE2-201ENST00000341472 PPP1R1BQ9UD71 204 aaPredicted RBP27.54■■■□□ 2
SYNE2-201ENST00000341472 RGPD3A6NKT7 1758 aaPredicted RBP27.53■■■□□ 2
SYNE2-201ENST00000341472 RGPD4Q7Z3J3 1758 aa27.53■■■□□ 2
SYNE2-201ENST00000341472 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.53■■■□□ 23e-6■■□□□ 13.5
SYNE2-201ENST00000341472 NHSQ6T4R5 1651 aa27.52■■■□□ 2
SYNE2-201ENST00000341472 ZBTB7AO95365 584 aa27.52■■■□□ 2
SYNE2-201ENST00000341472 AMER1Q5JTC6 1135 aaPredicted RBP27.51■■□□□ 1.99
SYNE2-201ENST00000341472 KAT6BQ8WYB5 2073 aa27.5■■□□□ 1.99
SYNE2-201ENST00000341472 MPRIPQ6WCQ1 1025 aa27.49■■□□□ 1.99
SYNE2-201ENST00000341472 ATF5Q9Y2D1 282 aaPredicted RBP27.49■■□□□ 1.99
SYNE2-201ENST00000341472 RGPD2P0DJD1 1756 aa27.49■■□□□ 1.99
SYNE2-201ENST00000341472 KCNQ4P56696 695 aa27.48■■□□□ 1.99
SYNE2-201ENST00000341472 NKX1-1Q15270 411 aaPredicted RBP27.48■■□□□ 1.99
SYNE2-201ENST00000341472 NCAPD2Q15021 1401 aa27.48■■□□□ 1.99
SYNE2-201ENST00000341472 ZNF827Q17R98 1081 aa27.47■■□□□ 1.99
SYNE2-201ENST00000341472 AKT1S1Q96B36 256 aa27.47■■□□□ 1.99
SYNE2-201ENST00000341472 CCNL1Q9UK58 526 aaPredicted RBP27.47■■□□□ 1.99
SYNE2-201ENST00000341472 PER1O15534 1290 aaPredicted RBP27.46■■□□□ 1.99
SYNE2-201ENST00000341472 IFNL2Q8IZJ0 200 aa27.45■■□□□ 1.98
SYNE2-201ENST00000341472 MTFR1LQ9H019 292 aa27.45■■□□□ 1.98
SYNE2-201ENST00000341472 IGSF1Q8N6C5 1336 aa27.43■■□□□ 1.98
SYNE2-201ENST00000341472 TFCP2L1Q9NZI6 479 aa27.43■■□□□ 1.98
SYNE2-201ENST00000341472 PHKG2P15735 406 aa27.42■■□□□ 1.98
SYNE2-201ENST00000341472 HMGB2P26583 209 aaKnown RBP27.42■■□□□ 1.98
SYNE2-201ENST00000341472 BTAF1O14981 1849 aa27.41■■□□□ 1.98
SYNE2-201ENST00000341472 PTGER2P43116 358 aa27.41■■□□□ 1.98
SYNE2-201ENST00000341472 PLEKHO1Q53GL0 409 aaPredicted RBP27.41■■□□□ 1.98
SYNE2-201ENST00000341472 PIGBQ92521 554 aa27.41■■□□□ 1.98
SYNE2-201ENST00000341472 SMARCC1Q92922 1105 aaPredicted RBP27.41■■□□□ 1.98
SYNE2-201ENST00000341472 MAP2P11137 1827 aaKnown RBP27.4■■□□□ 1.98
SYNE2-201ENST00000341472 CC2D1BQ5T0F9 858 aaKnown RBP27.4■■□□□ 1.98
SYNE2-201ENST00000341472 MTHFSP49914 203 aa27.39■■□□□ 1.98
SYNE2-201ENST00000341472 IL13P35225 146 aa27.38■■□□□ 1.97
SYNE2-201ENST00000341472 AMOTQ4VCS5 1084 aa27.37■■□□□ 1.97
SYNE2-201ENST00000341472 SLC16A10Q8TF71 515 aa27.37■■□□□ 1.97
SYNE2-201ENST00000341472 TMOD3Q9NYL9 352 aa27.37■■□□□ 1.97
SYNE2-201ENST00000341472 SULT6B1Q6IMI4 303 aa27.36■■□□□ 1.97
SYNE2-201ENST00000341472 ANKRD26Q9UPS8 1709 aa27.36■■□□□ 1.97
SYNE2-201ENST00000341472 PALLDQ8WX93 1383 aa27.35■■□□□ 1.97
SYNE2-201ENST00000341472 AEBP1Q8IUX7 1158 aa27.35■■□□□ 1.97
SYNE2-201ENST00000341472 PLEKHG2Q9H7P9 1386 aa27.35■■□□□ 1.97
SYNE2-201ENST00000341472 SHANK3Q9BYB0 1731 aa27.34■■□□□ 1.97
SYNE2-201ENST00000341472 HSP90AB1P08238 724 aaKnown RBP27.34■■□□□ 1.97
SYNE2-201ENST00000341472 CNGB1Q14028 1251 aaPredicted RBP27.34■■□□□ 1.97
SYNE2-201ENST00000341472 PNPLA7Q6ZV29 1317 aa27.34■■□□□ 1.97
SYNE2-201ENST00000341472 DCAF8L1A6NGE4 600 aa27.33■■□□□ 1.97
SYNE2-201ENST00000341472 SGIP1Q9BQI5 828 aa27.33■■□□□ 1.97
SYNE2-201ENST00000341472 ZNF530Q6P9A1 599 aaPredicted RBP27.32■■□□□ 1.96
SYNE2-201ENST00000341472 DOT1LQ8TEK3 1739 aa27.31■■□□□ 1.96
SYNE2-201ENST00000341472 MSH5O43196 834 aa27.31■■□□□ 1.96
SYNE2-201ENST00000341472 DCAF5Q96JK2 942 aa27.31■■□□□ 1.96
SYNE2-201ENST00000341472 ARXQ96QS3 562 aa27.31■■□□□ 1.96
SYNE2-201ENST00000341472 ERVV-2B6SEH9 535 aa27.3■■□□□ 1.96
SYNE2-201ENST00000341472 ASAP1Q9ULH1 1129 aa27.3■■□□□ 1.96
SYNE2-201ENST00000341472 PAPPAQ13219 1627 aa27.3■■□□□ 1.96
SYNE2-201ENST00000341472 CASZ1Q86V15 1759 aa27.3■■□□□ 1.96
SYNE2-201ENST00000341472 NPC1L1Q9UHC9 1359 aa27.28■■□□□ 1.96
SYNE2-201ENST00000341472 LOC102724428A0A0B4J2F2 783 aa27.28■■□□□ 1.96
SYNE2-201ENST00000341472 POLD1P28340 1107 aa27.28■■□□□ 1.96
SYNE2-201ENST00000341472 SIK1P57059 783 aa27.28■■□□□ 1.96
SYNE2-201ENST00000341472 C1orf141Q5JVX7 400 aa27.28■■□□□ 1.96
SYNE2-201ENST00000341472 COL23A1Q86Y22 540 aaPredicted RBP27.28■■□□□ 1.96
SYNE2-201ENST00000341472 DIAPH1O60610 1272 aaKnown RBP27.27■■□□□ 1.96
SYNE2-201ENST00000341472 SYT17Q9BSW7 474 aa27.27■■□□□ 1.96
SYNE2-201ENST00000341472 FHDC1Q9C0D6 1143 aaPredicted RBP27.27■■□□□ 1.96
SYNE2-201ENST00000341472 ATG3Q9NT62 314 aa27.27■■□□□ 1.96
SYNE2-201ENST00000341472 FLAD1Q8NFF5 587 aa27.26■■□□□ 1.95
SYNE2-201ENST00000341472 CABP4P57796 275 aa27.25■■□□□ 1.95
SYNE2-201ENST00000341472 PKD1L3Q7Z443 1732 aa27.24■■□□□ 1.95
SYNE2-201ENST00000341472 KDRP35968 1356 aa27.23■■□□□ 1.95
SYNE2-201ENST00000341472 AK7Q96M32 723 aa27.23■■□□□ 1.95
SYNE2-201ENST00000341472 HMOX1P09601 288 aa27.22■■□□□ 1.95
SYNE2-201ENST00000341472 ATP6V1AP38606 617 aa27.22■■□□□ 1.95
SYNE2-201ENST00000341472 LINC00116Q8NCU8 138 aa27.19■■□□□ 1.94
SYNE2-201ENST00000341472 LY75O60449 1722 aa27.19■■□□□ 1.94
SYNE2-201ENST00000341472 ITPK1Q13572 414 aa27.18■■□□□ 1.94
SYNE2-201ENST00000341472 AKAP4Q5JQC9 854 aa27.18■■□□□ 1.94
SYNE2-201ENST00000341472 RBM42Q9BTD8 480 aaKnown RBP27.18■■□□□ 1.94
SYNE2-201ENST00000341472 NFATC2IPQ8NCF5 419 aa27.17■■□□□ 1.94
SYNE2-201ENST00000341472 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.15■■□□□ 1.94
SYNE2-201ENST00000341472 U2SURPO15042 1029 aaKnown RBP27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms