RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 POLKQ9UBT6 870 aa21.12■□□□□ 0.97
VAPA-201ENST00000340541 KNSTRNQ9Y448 316 aa21.12■□□□□ 0.97
VAPA-201ENST00000340541 DCAF8L1A6NGE4 600 aa21.11■□□□□ 0.97
VAPA-201ENST00000340541 SLC15A2Q16348 729 aa21.11■□□□□ 0.97
VAPA-201ENST00000340541 TNNT2P45379 298 aaPredicted RBP21.09■□□□□ 0.97
VAPA-201ENST00000340541 NBPF6Q5VWK0 638 aa21.09■□□□□ 0.97
VAPA-201ENST00000340541 NBPF4Q96M43 638 aa21.09■□□□□ 0.97
VAPA-201ENST00000340541 CASZ1Q86V15 1759 aa21.09■□□□□ 0.97
VAPA-201ENST00000340541 NHSQ6T4R5 1651 aa21.09■□□□□ 0.97
VAPA-201ENST00000340541 SMG6Q86US8 1419 aaKnown RBP21.08■□□□□ 0.97
VAPA-201ENST00000340541 MEGF6O75095 1541 aa21.06■□□□□ 0.96
VAPA-201ENST00000340541 PPM1GO15355 546 aaPredicted RBP21.06■□□□□ 0.96
VAPA-201ENST00000340541 MORC1Q86VD1 984 aa21.06■□□□□ 0.96
VAPA-201ENST00000340541 ACSBG1Q96GR2 724 aa21.06■□□□□ 0.96
VAPA-201ENST00000340541 NCAPD2Q15021 1401 aa21.04■□□□□ 0.96
VAPA-201ENST00000340541 PTGER2P43116 358 aa21.04■□□□□ 0.96
VAPA-201ENST00000340541 USHBP1Q8N6Y0 703 aa21.04■□□□□ 0.96
VAPA-201ENST00000340541 PDGFDQ9GZP0 370 aaPredicted RBP21.04■□□□□ 0.96
VAPA-201ENST00000340541 SHANK3Q9BYB0 1731 aa21.04■□□□□ 0.96
VAPA-201ENST00000340541 ZBTB7AO95365 584 aa21.03■□□□□ 0.96
VAPA-201ENST00000340541 MTFR1LQ9H019 292 aa21.03■□□□□ 0.96
VAPA-201ENST00000340541 NPC1L1Q9UHC9 1359 aa21.02■□□□□ 0.96
VAPA-201ENST00000340541 YY1P25490 414 aa21.01■□□□□ 0.95
VAPA-201ENST00000340541 SLC27A3Q5K4L6 730 aa21.01■□□□□ 0.95
VAPA-201ENST00000340541 DDX54Q8TDD1 881 aaKnown RBP21.01■□□□□ 0.95
VAPA-201ENST00000340541 ATF5Q9Y2D1 282 aaPredicted RBP21■□□□□ 0.95
VAPA-201ENST00000340541 KAT6BQ8WYB5 2073 aa21■□□□□ 0.95
VAPA-201ENST00000340541 BTAF1O14981 1849 aa20.99■□□□□ 0.95
VAPA-201ENST00000340541 EIF4A2Q14240 407 aaKnown RBP20.99■□□□□ 0.95
VAPA-201ENST00000340541 CC2D1BQ5T0F9 858 aaKnown RBP20.99■□□□□ 0.95
VAPA-201ENST00000340541 ZCRB1Q8TBF4 217 aaKnown RBP20.98■□□□□ 0.95
VAPA-201ENST00000340541 EYA1Q99502 592 aa20.98■□□□□ 0.95
VAPA-201ENST00000340541 SGIP1Q9BQI5 828 aa20.98■□□□□ 0.95
VAPA-201ENST00000340541 LRRC4BQ9NT99 713 aa20.97■□□□□ 0.95
VAPA-201ENST00000340541 SLC16A10Q8TF71 515 aa20.96■□□□□ 0.95
VAPA-201ENST00000340541 RAPGEF4Q8WZA2 1011 aa20.96■□□□□ 0.95
VAPA-201ENST00000340541 PAPPAQ13219 1627 aa20.96■□□□□ 0.95
VAPA-201ENST00000340541 SYT17Q9BSW7 474 aa20.95■□□□□ 0.94
VAPA-201ENST00000340541 PKD1L3Q7Z443 1732 aa20.95■□□□□ 0.94
VAPA-201ENST00000340541 TATP17735 454 aaPredicted RBP20.94■□□□□ 0.94
VAPA-201ENST00000340541 PRIM1P49642 420 aaKnown RBP20.94■□□□□ 0.94
VAPA-201ENST00000340541 AKT1S1Q96B36 256 aa20.94■□□□□ 0.94
VAPA-201ENST00000340541 HMGB2P26583 209 aaKnown RBP20.93■□□□□ 0.94
VAPA-201ENST00000340541 IGSF1Q8N6C5 1336 aa20.93■□□□□ 0.94
VAPA-201ENST00000340541 ZNF827Q17R98 1081 aa20.92■□□□□ 0.94
VAPA-201ENST00000340541 ARXQ96QS3 562 aa20.92■□□□□ 0.94
VAPA-201ENST00000340541 FHDC1Q9C0D6 1143 aaPredicted RBP20.92■□□□□ 0.94
VAPA-201ENST00000340541 MTHFSP49914 203 aa20.91■□□□□ 0.94
VAPA-201ENST00000340541 SYTL4Q96C24 671 aaPredicted RBP20.91■□□□□ 0.94
VAPA-201ENST00000340541 DOT1LQ8TEK3 1739 aa20.9■□□□□ 0.94
VAPA-201ENST00000340541 MAP3K5Q99683 1374 aa20.9■□□□□ 0.94
VAPA-201ENST00000340541 IL13P35225 146 aa20.89■□□□□ 0.93
VAPA-201ENST00000340541 CNGB1Q14028 1251 aaPredicted RBP20.89■□□□□ 0.93
VAPA-201ENST00000340541 QSER1Q2KHR3 1735 aa20.89■□□□□ 0.93
VAPA-201ENST00000340541 CYP27B1O15528 508 aa20.88■□□□□ 0.93
VAPA-201ENST00000340541 ZEB1P37275 1124 aaPredicted RBP20.88■□□□□ 0.93
VAPA-201ENST00000340541 PCDH11XQ9BZA7 1347 aa20.87■□□□□ 0.93
VAPA-201ENST00000340541 PCDH11YQ9BZA8 1340 aa20.87■□□□□ 0.93
VAPA-201ENST00000340541 TFCP2L1Q9NZI6 479 aa20.87■□□□□ 0.93
VAPA-201ENST00000340541 COL3A1P02461 1466 aaPredicted RBP20.87■□□□□ 0.93
VAPA-201ENST00000340541 PLEKHG2Q9H7P9 1386 aa20.86■□□□□ 0.93
VAPA-201ENST00000340541 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.86■□□□□ 0.931e-7■■□□□ 12.4
VAPA-201ENST00000340541 LY75O60449 1722 aa20.85■□□□□ 0.93
VAPA-201ENST00000340541 AEBP1Q8IUX7 1158 aa20.85■□□□□ 0.93
VAPA-201ENST00000340541 KDRP35968 1356 aa20.85■□□□□ 0.93
VAPA-201ENST00000340541 TOGARAM1Q9Y4F4 1720 aa20.84■□□□□ 0.93
VAPA-201ENST00000340541 PNPLA7Q6ZV29 1317 aa20.84■□□□□ 0.93
VAPA-201ENST00000340541 POLD1P28340 1107 aa20.84■□□□□ 0.93
VAPA-201ENST00000340541 CCNL1Q9UK58 526 aaPredicted RBP20.83■□□□□ 0.93
VAPA-201ENST00000340541 SPG7Q9UQ90 795 aa20.83■□□□□ 0.93
VAPA-201ENST00000340541 COL24A1Q17RW2 1714 aa20.82■□□□□ 0.92
VAPA-201ENST00000340541 NKX1-1Q15270 411 aaPredicted RBP20.81■□□□□ 0.92
VAPA-201ENST00000340541 SULT6B1Q6IMI4 303 aa20.81■□□□□ 0.92
VAPA-201ENST00000340541 PPP2R1AP30153 589 aa20.8■□□□□ 0.92
VAPA-201ENST00000340541 KCNQ4P56696 695 aa20.8■□□□□ 0.92
VAPA-201ENST00000340541 ITGB4P16144 1822 aa20.79■□□□□ 0.92
VAPA-201ENST00000340541 DIAPH1O60610 1272 aaKnown RBP20.79■□□□□ 0.92
VAPA-201ENST00000340541 PHKG2P15735 406 aa20.78■□□□□ 0.92
VAPA-201ENST00000340541 FLAD1Q8NFF5 587 aa20.78■□□□□ 0.92
VAPA-201ENST00000340541 DDX10Q13206 875 aaKnown RBP20.77■□□□□ 0.92
VAPA-201ENST00000340541 SMARCC1Q92922 1105 aaPredicted RBP20.77■□□□□ 0.92
VAPA-201ENST00000340541 IFNL2Q8IZJ0 200 aa20.76■□□□□ 0.91
VAPA-201ENST00000340541 CHD4Q14839 1912 aa20.76■□□□□ 0.91
VAPA-201ENST00000340541 PLEKHO1Q53GL0 409 aaPredicted RBP20.75■□□□□ 0.91
VAPA-201ENST00000340541 ZNF784Q8NCA9 323 aaPredicted RBP20.75■□□□□ 0.91
VAPA-201ENST00000340541 TUBGCP6Q96RT7 1819 aa20.74■□□□□ 0.91
VAPA-201ENST00000340541 HMOX1P09601 288 aa20.74■□□□□ 0.91
VAPA-201ENST00000340541 GPR162Q16538 588 aa20.74■□□□□ 0.91
VAPA-201ENST00000340541 AMOTQ4VCS5 1084 aa20.74■□□□□ 0.91
VAPA-201ENST00000340541 MPRIPQ6WCQ1 1025 aa20.74■□□□□ 0.91
VAPA-201ENST00000340541 COL23A1Q86Y22 540 aaPredicted RBP20.74■□□□□ 0.91
VAPA-201ENST00000340541 PALLDQ8WX93 1383 aa20.72■□□□□ 0.91
VAPA-201ENST00000340541 UTRNP46939 3433 aa20.72■□□□□ 0.91
VAPA-201ENST00000340541 MSH5O43196 834 aa20.72■□□□□ 0.91
VAPA-201ENST00000340541 ZNF530Q6P9A1 599 aaPredicted RBP20.72■□□□□ 0.91
VAPA-201ENST00000340541 KDM6AO15550 1401 aaPredicted RBP20.71■□□□□ 0.91
VAPA-201ENST00000340541 CFAP53Q96M91 514 aa20.71■□□□□ 0.91
VAPA-201ENST00000340541 PIGBQ92521 554 aa20.7■□□□□ 0.9
VAPA-201ENST00000340541 U2SURPO15042 1029 aaKnown RBP20.69■□□□□ 0.9
VAPA-201ENST00000340541 C5P01031 1676 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms