RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 NEXMIFQ5QGS0 1516 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 IKQ13123 557 aaPredicted RBP3.94□□□□□ -1.78
CSMD3-202ENST00000339701 TRPM2O94759 1503 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 SENP3-EIF4A1A0A087X0R7 540 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 MBD3O95983 291 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 CTR9Q6PD62 1173 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 MYOM2P54296 1465 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 AFAP1Q8N556 730 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 DESP17661 470 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 RPGRQ92834 1020 aaKnown RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 CARD11Q9BXL7 1154 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 ZNF644Q9H582 1327 aaPredicted RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 EZRP15311 586 aaKnown RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 MPHOSPH10O00566 681 aaKnown RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 OGFOD1Q8N543 542 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 SPRYD3Q8NCJ5 442 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 DNAAF4Q8WXU2 420 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 GBP3Q9H0R5 595 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 ZNF219Q9P2Y4 722 aaPredicted RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 SPG7Q9UQ90 795 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 NUCB2P80303 420 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 HSP90AB4PQ58FF6 505 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 DDX54Q8TDD1 881 aaKnown RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 RUFY2Q8WXA3 655 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 TFCP2L1Q9NZI6 479 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 MAGI3Q5TCQ9 1506 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 STARD3NLO95772 234 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 CNGA1P29973 690 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 EIF6P56537 245 aaKnown RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 HIRIP3Q9BW71 556 aaPredicted RBP3.93□□□□□ -1.78
CSMD3-202ENST00000339701 EVC2Q86UK5 1308 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 ANKRD36BQ8N2N9 1353 aa3.93□□□□□ -1.78
CSMD3-202ENST00000339701 ZBTB24O43167 697 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 CT47A1Q5JQC4 288 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 CAPN15O75808 1086 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 TMEM132AQ24JP5 1023 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 RBM42Q9BTD8 480 aaKnown RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 SBNO2Q9Y2G9 1366 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 CLTCL1P53675 1640 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 MAP3K4Q9Y6R4 1608 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 PPLO60437 1756 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 GOLGA6L19H0YKK7 550 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 EIF3JO75822 258 aaKnown RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 TRPC5Q9UL62 973 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 PARP3Q9Y6F1 533 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 GRIN3BO60391 1043 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 MORC1Q86VD1 984 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 FLAD1Q8NFF5 587 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 TRPM1Q7Z4N2 1603 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 KIF24Q5T7B8 1368 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 SAMD1Q6SPF0 538 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 PODNQ7Z5L7 613 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 SLC52A1Q9NWF4 448 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 USP21Q9UK80 565 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 NPC1L1Q9UHC9 1359 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 DCAF11Q8TEB1 546 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 PPM1EQ8WY54 764 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 DDX11Q96FC9 970 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 GNL3LQ9NVN8 582 aaKnown RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 LPXNO60711 386 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 CA8P35219 290 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 MFAP1P55081 439 aaKnown RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 SART3Q15020 963 aaKnown RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 ERLIN2O94905 339 aa3.92□□□□□ -1.78
CSMD3-202ENST00000339701 ABT1Q9ULW3 272 aaKnown RBP3.92□□□□□ -1.78
CSMD3-202ENST00000339701 LOXHD1Q8IVV2 1947 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 DDX10Q13206 875 aaKnown RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 CCDC102AQ96A19 550 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 VIMP08670 466 aaKnown RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 SPATA24Q86W54 205 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 ZNF622Q969S3 477 aaKnown RBP eCLIP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 RUFY1Q96T51 708 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 ZNF142P52746 1687 aaPredicted RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 FAM193AP78312 1265 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 YY1P25490 414 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 MIER1Q8N108 512 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 GOLGA6L10A6NI86 522 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 CGNQ9P2M7 1197 aaKnown RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 TRAPPC8Q9Y2L5 1435 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 EIF4E1BA6NMX2 242 aaKnown RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 ERLIN1O75477 346 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 SETSIPP0DME0 302 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 WDR78Q5VTH9 848 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 ZSCAN29Q8IWY8 852 aaPredicted RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 JMYQ8N9B5 988 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 KCNH5Q8NCM2 988 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 GIGYF1O75420 1035 aaPredicted RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 APBA3O96018 575 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 LUZP1Q86V48 1076 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 PTPRKQ15262 1439 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 KDM2BQ8NHM5 1336 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 FER1L4A9Z1Z3 1794 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 C10orf67Q8IYJ2 551 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 ZNHIT6Q9NWK9 470 aaKnown RBP3.91□□□□□ -1.78
CSMD3-202ENST00000339701 NPHP3Q7Z494 1330 aa3.91□□□□□ -1.78
CSMD3-202ENST00000339701 SLC3A2P08195 630 aaKnown RBP3.9□□□□□ -1.78
CSMD3-202ENST00000339701 QTRT2Q9H974 415 aaKnown RBP3.9□□□□□ -1.78
CSMD3-202ENST00000339701 GPBP1L1Q9HC44 474 aaPredicted RBP3.9□□□□□ -1.78
CSMD3-202ENST00000339701 ZFYVE9O95405 1425 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms