RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 NPHP3Q7Z494 1330 aa28.76■■■□□ 2.19
PDLIM2-203ENST00000339162 AXIN2Q9Y2T1 843 aa28.76■■■□□ 2.19
PDLIM2-203ENST00000339162 KRT24Q2M2I5 525 aa28.75■■■□□ 2.19
PDLIM2-203ENST00000339162 ALDH1L2Q3SY69 923 aa28.75■■■□□ 2.19
PDLIM2-203ENST00000339162 CABLES1Q8TDN4 633 aa28.75■■■□□ 2.19
PDLIM2-203ENST00000339162 CHL1O00533 1208 aa28.74■■■□□ 2.19
PDLIM2-203ENST00000339162 ATF7IPQ6VMQ6 1270 aa28.74■■■□□ 2.19
PDLIM2-203ENST00000339162 CRB1P82279 1406 aa28.73■■■□□ 2.19
PDLIM2-203ENST00000339162 ALS2Q96Q42 1657 aa28.73■■■□□ 2.19
PDLIM2-203ENST00000339162 BRINP3Q76B58 766 aa28.73■■■□□ 2.19
PDLIM2-203ENST00000339162 CENPQQ7L2Z9 268 aaPredicted RBP28.72■■■□□ 2.19
PDLIM2-203ENST00000339162 MED1Q15648 1581 aaPredicted RBP28.72■■■□□ 2.19
PDLIM2-203ENST00000339162 MVPQ14764 893 aaKnown RBP28.71■■■□□ 2.19
PDLIM2-203ENST00000339162 KIF16BQ96L93 1317 aa28.71■■■□□ 2.19
PDLIM2-203ENST00000339162 ANKRD24Q8TF21 1146 aa28.71■■■□□ 2.19
PDLIM2-203ENST00000339162 ZNF428Q96B54 188 aa28.71■■■□□ 2.19
PDLIM2-203ENST00000339162 GNAT3A8MTJ3 354 aa28.7■■■□□ 2.19
PDLIM2-203ENST00000339162 RGPD2P0DJD1 1756 aa28.7■■■□□ 2.18
PDLIM2-203ENST00000339162 IGHDP01880 384 aa28.7■■■□□ 2.18
PDLIM2-203ENST00000339162 PHRF1Q9P1Y6 1649 aaKnown RBP28.69■■■□□ 2.18
PDLIM2-203ENST00000339162 MRPL50Q8N5N7 158 aaKnown RBP28.69■■■□□ 2.18
PDLIM2-203ENST00000339162 SLAIN2Q9P270 581 aa28.68■■■□□ 2.18
PDLIM2-203ENST00000339162 IPO8O15397 1037 aaKnown RBP28.67■■■□□ 2.18
PDLIM2-203ENST00000339162 PXDNQ92626 1479 aa28.67■■■□□ 2.18
PDLIM2-203ENST00000339162 MS4A1P11836 297 aa28.67■■■□□ 2.18
PDLIM2-203ENST00000339162 ITPRIPQ8IWB1 547 aa28.67■■■□□ 2.18
PDLIM2-203ENST00000339162 TMEM57Q8N5G2 664 aa28.66■■■□□ 2.18
PDLIM2-203ENST00000339162 TNS3Q68CZ2 1445 aa28.66■■■□□ 2.18
PDLIM2-203ENST00000339162 IL17REQ8NFR9 667 aa28.66■■■□□ 2.18
PDLIM2-203ENST00000339162 TSPYL4Q9UJ04 414 aa28.66■■■□□ 2.18
PDLIM2-203ENST00000339162 PCDHB15Q9Y5E8 787 aa28.66■■■□□ 2.18
PDLIM2-203ENST00000339162 SPATA31A3Q5VYP0 1347 aa28.65■■■□□ 2.18
PDLIM2-203ENST00000339162 MAP3K5Q99683 1374 aa28.65■■■□□ 2.18
PDLIM2-203ENST00000339162 HTATSF1O43719 755 aaKnown RBP28.63■■■□□ 2.17
PDLIM2-203ENST00000339162 BRPF1P55201 1214 aaPredicted RBP28.63■■■□□ 2.17
PDLIM2-203ENST00000339162 CHRNA2Q15822 529 aa28.61■■■□□ 2.17
PDLIM2-203ENST00000339162 RGPD5Q99666 1765 aa28.61■■■□□ 2.17
PDLIM2-203ENST00000339162 ERBB3P21860 1342 aa28.6■■■□□ 2.17
PDLIM2-203ENST00000339162 DDX19BQ9UMR2 479 aa28.59■■■□□ 2.17
PDLIM2-203ENST00000339162 KIAA0232Q92628 1395 aa28.58■■■□□ 2.17
PDLIM2-203ENST00000339162 AAMPQ13685 434 aa28.58■■■□□ 2.17
PDLIM2-203ENST00000339162 LGR6Q9HBX8 967 aa28.57■■■□□ 2.16
PDLIM2-203ENST00000339162 ZNF530Q6P9A1 599 aaPredicted RBP28.56■■■□□ 2.16
PDLIM2-203ENST00000339162 PLEKHO1Q53GL0 409 aaPredicted RBP28.55■■■□□ 2.16
PDLIM2-203ENST00000339162 ARHGAP45Q92619 1136 aa28.55■■■□□ 2.16
PDLIM2-203ENST00000339162 NLRP2Q9NX02 1062 aa28.55■■■□□ 2.16
PDLIM2-203ENST00000339162 LRRC37A3O60309 1634 aa28.54■■■□□ 2.16
PDLIM2-203ENST00000339162 RGS3P49796 1198 aa28.53■■■□□ 2.16
PDLIM2-203ENST00000339162 TAF7Q15545 349 aaPredicted RBP28.53■■■□□ 2.16
PDLIM2-203ENST00000339162 SOS2Q07890 1332 aaPredicted RBP28.52■■■□□ 2.16
PDLIM2-203ENST00000339162 NCAPD2Q15021 1401 aa28.52■■■□□ 2.16
PDLIM2-203ENST00000339162 MPRIPQ6WCQ1 1025 aa28.52■■■□□ 2.16
PDLIM2-203ENST00000339162 CSB-PGBD3P0DP91 1061 aa28.51■■■□□ 2.16
PDLIM2-203ENST00000339162 HAP1P54257 671 aaPredicted RBP28.51■■■□□ 2.16
PDLIM2-203ENST00000339162 ZBTB40Q9NUA8 1239 aa28.5■■■□□ 2.15
PDLIM2-203ENST00000339162 AMOTQ4VCS5 1084 aa28.5■■■□□ 2.15
PDLIM2-203ENST00000339162 AKAP4Q5JQC9 854 aa28.5■■■□□ 2.15
PDLIM2-203ENST00000339162 CEMIPQ8WUJ3 1361 aa28.49■■■□□ 2.15
PDLIM2-203ENST00000339162 SLC4A2P04920 1241 aa28.49■■■□□ 2.15
PDLIM2-203ENST00000339162 ABCC4O15439 1325 aa28.48■■■□□ 2.15
PDLIM2-203ENST00000339162 C1orf141Q5JVX7 400 aa28.47■■■□□ 2.15
PDLIM2-203ENST00000339162 NECTIN2Q92692 538 aa28.47■■■□□ 2.15
PDLIM2-203ENST00000339162 API5Q9BZZ5 524 aaKnown RBP28.47■■■□□ 2.15
PDLIM2-203ENST00000339162 RWDD1Q9H446 243 aaPredicted RBP28.47■■■□□ 2.15
PDLIM2-203ENST00000339162 COL18A1P39060 1754 aa28.47■■■□□ 2.15
PDLIM2-203ENST00000339162 CRYBG1Q9Y4K1 1723 aa28.47■■■□□ 2.15
PDLIM2-203ENST00000339162 CAMTA1Q9Y6Y1 1673 aa28.46■■■□□ 2.15
PDLIM2-203ENST00000339162 PDE4AP27815 886 aa28.46■■■□□ 2.15
PDLIM2-203ENST00000339162 ZBTB7BO15156 539 aaPredicted RBP28.45■■■□□ 2.15
PDLIM2-203ENST00000339162 RAPGEF4Q8WZA2 1011 aa28.45■■■□□ 2.14
PDLIM2-203ENST00000339162 G2E3Q7L622 706 aa28.43■■■□□ 2.14
PDLIM2-203ENST00000339162 PRDM11Q9NQV5 511 aa28.43■■■□□ 2.14
PDLIM2-203ENST00000339162 CPDO75976 1380 aa28.43■■■□□ 2.14
PDLIM2-203ENST00000339162 TEFQ10587 303 aa28.43■■■□□ 2.14
PDLIM2-203ENST00000339162 C1orf115Q9H7X2 142 aa28.43■■■□□ 2.14
PDLIM2-203ENST00000339162 RNMTO43148 476 aaKnown RBP28.42■■■□□ 2.14
PDLIM2-203ENST00000339162 LMO7Q8WWI1 1683 aa28.41■■■□□ 2.14
PDLIM2-203ENST00000339162 KCNQ3O43525 872 aa28.41■■■□□ 2.14
PDLIM2-203ENST00000339162 BABAM1Q9NWV8 329 aa28.41■■■□□ 2.14
PDLIM2-203ENST00000339162 RGS12O14924 1447 aa28.4■■■□□ 2.14
PDLIM2-203ENST00000339162 BACH2Q9BYV9 841 aa28.39■■■□□ 2.14
PDLIM2-203ENST00000339162 BTBD11A6QL63 1104 aa28.38■■■□□ 2.13
PDLIM2-203ENST00000339162 TATP17735 454 aaPredicted RBP28.38■■■□□ 2.13
PDLIM2-203ENST00000339162 PDZRN3Q9UPQ7 1066 aa28.38■■■□□ 2.13
PDLIM2-203ENST00000339162 MEGF6O75095 1541 aa28.38■■■□□ 2.13
PDLIM2-203ENST00000339162 STK31Q9BXU1 1019 aa28.38■■■□□ 2.13
PDLIM2-203ENST00000339162 HDAC1Q13547 482 aaPredicted RBP28.37■■■□□ 2.13
PDLIM2-203ENST00000339162 PTPRCP08575 1304 aa28.37■■■□□ 2.13
PDLIM2-203ENST00000339162 FAM208AQ9UK61 1670 aaKnown RBP28.37■■■□□ 2.13
PDLIM2-203ENST00000339162 CCDC30Q5VVM6 783 aa28.37■■■□□ 2.13
PDLIM2-203ENST00000339162 EIF4A1P60842 406 aaKnown RBP28.36■■■□□ 2.13
PDLIM2-203ENST00000339162 F6X3S4 739 aa28.35■■■□□ 2.13
PDLIM2-203ENST00000339162 INTS3Q68E01 1043 aaKnown RBP28.34■■■□□ 2.13
PDLIM2-203ENST00000339162 EIF2S2P20042 333 aaKnown RBP28.33■■■□□ 2.13
PDLIM2-203ENST00000339162 HDGFL1Q5TGJ6 251 aa28.33■■■□□ 2.12
PDLIM2-203ENST00000339162 SLC4A10Q6U841 1118 aa28.33■■■□□ 2.12
PDLIM2-203ENST00000339162 NHSL1Q5SYE7 1610 aa28.32■■■□□ 2.12
PDLIM2-203ENST00000339162 CHMP4BQ9H444 224 aaKnown RBP28.32■■■□□ 2.12
PDLIM2-203ENST00000339162 SPG7Q9UQ90 795 aa28.32■■■□□ 2.12
PDLIM2-203ENST00000339162 ABCC6O95255 1503 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms