RNA–Protein interactions for RNA: ENST00000339037.3

LINC01116-202, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 3 BASIC

Gene LINC01116, Length 838 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-202ENST00000339037 ZNF827Q17R98 1081 aa21.98■■□□□ 1.11
LINC01116-202ENST00000339037 LRRC4BQ9NT99 713 aa21.98■■□□□ 1.11
LINC01116-202ENST00000339037 HOXC9P31274 260 aa21.97■■□□□ 1.11
LINC01116-202ENST00000339037 SLC27A3Q5K4L6 730 aa21.96■■□□□ 1.11
LINC01116-202ENST00000339037 ARXQ96QS3 562 aa21.96■■□□□ 1.11
LINC01116-202ENST00000339037 ANKRD36BQ8N2N9 1353 aa21.96■■□□□ 1.11
LINC01116-202ENST00000339037 SYTL4Q96C24 671 aaPredicted RBP21.95■■□□□ 1.1
LINC01116-202ENST00000339037 FBLN1P23142 703 aa21.94■■□□□ 1.1
LINC01116-202ENST00000339037 RTL1A6NKG5 1358 aa21.93■■□□□ 1.1
LINC01116-202ENST00000339037 AKT1S1Q96B36 256 aa21.92■■□□□ 1.1
LINC01116-202ENST00000339037 MEGF6O75095 1541 aa21.91■■□□□ 1.1
LINC01116-202ENST00000339037 MAP3K5Q99683 1374 aa21.91■■□□□ 1.1
LINC01116-202ENST00000339037 PRIM1P49642 420 aaKnown RBP21.91■■□□□ 1.1
LINC01116-202ENST00000339037 TRIM26Q12899 539 aaPredicted RBP21.91■■□□□ 1.1
LINC01116-202ENST00000339037 ZCRB1Q8TBF4 217 aaKnown RBP21.91■■□□□ 1.1
LINC01116-202ENST00000339037 TMF1P82094 1093 aa21.89■■□□□ 1.09
LINC01116-202ENST00000339037 RRS1Q15050 365 aaKnown RBP21.89■■□□□ 1.09
LINC01116-202ENST00000339037 SLC16A10Q8TF71 515 aa21.89■■□□□ 1.09
LINC01116-202ENST00000339037 DOT1LQ8TEK3 1739 aa21.89■■□□□ 1.09
LINC01116-202ENST00000339037 USP47Q96K76 1375 aa21.88■■□□□ 1.09
LINC01116-202ENST00000339037 GGNBP2Q9H3C7 697 aa21.88■■□□□ 1.09
LINC01116-202ENST00000339037 TFCP2L1Q9NZI6 479 aa21.88■■□□□ 1.09
LINC01116-202ENST00000339037 U3KPZ7 1027 aaPredicted RBP21.88■■□□□ 1.09
LINC01116-202ENST00000339037 SMG6Q86US8 1419 aaKnown RBP21.88■■□□□ 1.09
LINC01116-202ENST00000339037 NSD2O96028 1365 aa21.87■■□□□ 1.09
LINC01116-202ENST00000339037 PNPLA7Q6ZV29 1317 aa21.87■■□□□ 1.09
LINC01116-202ENST00000339037 FYB1O15117 783 aa21.87■■□□□ 1.09
LINC01116-202ENST00000339037 KCNQ4P56696 695 aa21.87■■□□□ 1.09
LINC01116-202ENST00000339037 CGNL1Q0VF96 1302 aa21.86■■□□□ 1.09
LINC01116-202ENST00000339037 POLD1P28340 1107 aa21.86■■□□□ 1.09
LINC01116-202ENST00000339037 NBPF6Q5VWK0 638 aa21.86■■□□□ 1.09
LINC01116-202ENST00000339037 ZNF784Q8NCA9 323 aaPredicted RBP21.86■■□□□ 1.09
LINC01116-202ENST00000339037 NBPF4Q96M43 638 aa21.86■■□□□ 1.09
LINC01116-202ENST00000339037 SHANK3Q9BYB0 1731 aa21.86■■□□□ 1.09
LINC01116-202ENST00000339037 RGPD2P0DJD1 1756 aa21.85■■□□□ 1.09
LINC01116-202ENST00000339037 RAPGEF4Q8WZA2 1011 aa21.85■■□□□ 1.09
LINC01116-202ENST00000339037 QSER1Q2KHR3 1735 aa21.85■■□□□ 1.09
LINC01116-202ENST00000339037 KLHL34Q8N239 644 aa21.84■■□□□ 1.09
LINC01116-202ENST00000339037 USHBP1Q8N6Y0 703 aa21.84■■□□□ 1.09
LINC01116-202ENST00000339037 CCNL1Q9UK58 526 aaPredicted RBP21.84■■□□□ 1.09
LINC01116-202ENST00000339037 CDCA8Q53HL2 280 aa21.82■■□□□ 1.08
LINC01116-202ENST00000339037 LY75O60449 1722 aa21.82■■□□□ 1.08
LINC01116-202ENST00000339037 GPR162Q16538 588 aa21.81■■□□□ 1.08
LINC01116-202ENST00000339037 HSP90AB2PQ58FF8 381 aa21.81■■□□□ 1.08
LINC01116-202ENST00000339037 INSRP06213 1382 aa21.81■■□□□ 1.08
LINC01116-202ENST00000339037 FLT4P35916 1363 aa21.81■■□□□ 1.08
LINC01116-202ENST00000339037 TATP17735 454 aaPredicted RBP21.8■■□□□ 1.08
LINC01116-202ENST00000339037 KIF24Q5T7B8 1368 aa21.79■■□□□ 1.08
LINC01116-202ENST00000339037 TUBGCP6Q96RT7 1819 aa21.79■■□□□ 1.08
LINC01116-202ENST00000339037 PCDH11XQ9BZA7 1347 aa21.79■■□□□ 1.08
LINC01116-202ENST00000339037 PCDH11YQ9BZA8 1340 aa21.79■■□□□ 1.08
LINC01116-202ENST00000339037 CHD4Q14839 1912 aa21.78■■□□□ 1.08
LINC01116-202ENST00000339037 COL24A1Q17RW2 1714 aa21.77■■□□□ 1.08
LINC01116-202ENST00000339037 KIF20BQ96Q89 1820 aa21.76■■□□□ 1.07
LINC01116-202ENST00000339037 PELP1Q8IZL8 1130 aaKnown RBP21.75■■□□□ 1.07
LINC01116-202ENST00000339037 NSD3Q9BZ95 1437 aa21.74■■□□□ 1.07
LINC01116-202ENST00000339037 COL23A1Q86Y22 540 aaPredicted RBP21.74■■□□□ 1.07
LINC01116-202ENST00000339037 NLGN2Q8NFZ4 835 aa21.74■■□□□ 1.07
LINC01116-202ENST00000339037 CARD14Q9BXL6 1004 aa21.73■■□□□ 1.07
LINC01116-202ENST00000339037 PALLDQ8WX93 1383 aa21.73■■□□□ 1.07
LINC01116-202ENST00000339037 CYP27B1O15528 508 aa21.72■■□□□ 1.07
LINC01116-202ENST00000339037 HMGB2P26583 209 aaKnown RBP21.72■■□□□ 1.07
LINC01116-202ENST00000339037 MPRIPQ6WCQ1 1025 aa21.72■■□□□ 1.07
LINC01116-202ENST00000339037 EMILIN1Q9Y6C2 1016 aa21.72■■□□□ 1.07
LINC01116-202ENST00000339037 CEP350Q5VT06 3117 aa21.72■■□□□ 1.07
LINC01116-202ENST00000339037 PPM1GO15355 546 aaPredicted RBP21.7■■□□□ 1.06
LINC01116-202ENST00000339037 MSL1Q68DK7 614 aa21.7■■□□□ 1.06
LINC01116-202ENST00000339037 C5P01031 1676 aa21.69■■□□□ 1.06
LINC01116-202ENST00000339037 FLAD1Q8NFF5 587 aa21.68■■□□□ 1.06
LINC01116-202ENST00000339037 NCAPD2Q15021 1401 aa21.67■■□□□ 1.06
LINC01116-202ENST00000339037 SAMD1Q6SPF0 538 aaPredicted RBP21.67■■□□□ 1.06
LINC01116-202ENST00000339037 SMARCC1Q92922 1105 aaPredicted RBP21.67■■□□□ 1.06
LINC01116-202ENST00000339037 PKD1L3Q7Z443 1732 aa21.66■■□□□ 1.06
LINC01116-202ENST00000339037 TOGARAM1Q9Y4F4 1720 aa21.66■■□□□ 1.06
LINC01116-202ENST00000339037 GRIN3BO60391 1043 aa21.65■■□□□ 1.06
LINC01116-202ENST00000339037 C1QTNF8P60827 252 aa21.65■■□□□ 1.06
LINC01116-202ENST00000339037 SPG7Q9UQ90 795 aa21.65■■□□□ 1.06
LINC01116-202ENST00000339037 ANKRD26Q9UPS8 1709 aa21.64■■□□□ 1.06
LINC01116-202ENST00000339037 WASHC2AQ641Q2 1341 aa21.64■■□□□ 1.05
LINC01116-202ENST00000339037 YBX3P16989 372 aaKnown RBP eCLIP21.64■■□□□ 1.05
LINC01116-202ENST00000339037 AK7Q96M32 723 aa21.64■■□□□ 1.05
LINC01116-202ENST00000339037 TIMELESSQ9UNS1 1208 aa21.64■■□□□ 1.05
LINC01116-202ENST00000339037 SENP3-EIF4A1A0A087X0R7 540 aa21.63■■□□□ 1.05
LINC01116-202ENST00000339037 NKX1-1Q15270 411 aaPredicted RBP21.63■■□□□ 1.05
LINC01116-202ENST00000339037 PIGBQ92521 554 aa21.63■■□□□ 1.05
LINC01116-202ENST00000339037 C4BP0C0L5 1744 aa21.63■■□□□ 1.05
LINC01116-202ENST00000339037 TAF1LQ8IZX4 1826 aa21.62■■□□□ 1.05
LINC01116-202ENST00000339037 CD2APQ9Y5K6 639 aa21.62■■□□□ 1.05
LINC01116-202ENST00000339037 GIGYF1O75420 1035 aaPredicted RBP21.61■■□□□ 1.05
LINC01116-202ENST00000339037 EYA1Q99502 592 aa21.61■■□□□ 1.05
LINC01116-202ENST00000339037 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.61■■□□□ 1.05
LINC01116-202ENST00000339037 ITGB4P16144 1822 aa21.61■■□□□ 1.05
LINC01116-202ENST00000339037 PHF14O94880 888 aa21.59■■□□□ 1.05
LINC01116-202ENST00000339037 AMIGO3Q86WK7 504 aa21.59■■□□□ 1.05
LINC01116-202ENST00000339037 TMOD3Q9NYL9 352 aa21.59■■□□□ 1.05
LINC01116-202ENST00000339037 POLKQ9UBT6 870 aa21.59■■□□□ 1.05
LINC01116-202ENST00000339037 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.58■■□□□ 1.05
LINC01116-202ENST00000339037 LOC102724428A0A0B4J2F2 783 aa21.58■■□□□ 1.05
LINC01116-202ENST00000339037 SIK1P57059 783 aa21.58■■□□□ 1.05
LINC01116-202ENST00000339037 POLR3GLQ9BT43 218 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms