RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 CASTP20810 708 aaKnown RBP16.28■□□□□ 0.2
RTN4-202ENST00000337526 FILIP1Q7Z7B0 1213 aa16.28■□□□□ 0.2
RTN4-202ENST00000337526 TNPO1Q92973 898 aaKnown RBP16.28■□□□□ 0.2
RTN4-202ENST00000337526 ADGRF5Q8IZF2 1346 aa16.28■□□□□ 0.2
RTN4-202ENST00000337526 KRT32Q14532 448 aa16.28■□□□□ 0.2
RTN4-202ENST00000337526 RBM42Q9BTD8 480 aaKnown RBP16.28■□□□□ 0.2
RTN4-202ENST00000337526 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTN4-202ENST00000337526 WAPLQ7Z5K2 1190 aa16.27■□□□□ 0.2
RTN4-202ENST00000337526 KIF6Q6ZMV9 814 aa16.27■□□□□ 0.2
RTN4-202ENST00000337526 PROSER2Q86WR7 435 aaPredicted RBP16.27■□□□□ 0.2
RTN4-202ENST00000337526 BTBD11A6QL63 1104 aa16.27■□□□□ 0.2
RTN4-202ENST00000337526 GLRX3O76003 335 aaKnown RBP16.27■□□□□ 0.2
RTN4-202ENST00000337526 CAGE1Q8TC20 777 aa16.27■□□□□ 0.2
RTN4-202ENST00000337526 SSFA2P28290 1259 aa16.27■□□□□ 0.19
RTN4-202ENST00000337526 DHX8Q14562 1220 aaKnown RBP16.27■□□□□ 0.19
RTN4-202ENST00000337526 TRIM22Q8IYM9 498 aa16.27■□□□□ 0.19
RTN4-202ENST00000337526 SMARCE1Q969G3 411 aa16.27■□□□□ 0.19
RTN4-202ENST00000337526 GNAT3A8MTJ3 354 aa16.26■□□□□ 0.19
RTN4-202ENST00000337526 FKBP4Q02790 459 aaKnown RBP eCLIP16.26■□□□□ 0.19
RTN4-202ENST00000337526 CABP4P57796 275 aa16.26■□□□□ 0.19
RTN4-202ENST00000337526 CEP57L1Q8IYX8 460 aa16.26■□□□□ 0.19
RTN4-202ENST00000337526 ERCC4Q92889 916 aaPredicted RBP16.26■□□□□ 0.19
RTN4-202ENST00000337526 RRP9O43818 475 aaKnown RBP16.26■□□□□ 0.19
RTN4-202ENST00000337526 TXLNAP40222 546 aa16.26■□□□□ 0.19
RTN4-202ENST00000337526 CEP126Q9P2H0 1117 aa16.26■□□□□ 0.19
RTN4-202ENST00000337526 CDR1P51861 262 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 MAP3K11Q16584 847 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 IQGAP2Q13576 1575 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 CCDC66A2RUB6 948 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 CCDC57Q2TAC2 916 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 TBC1D32Q96NH3 1257 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 EMILIN1Q9Y6C2 1016 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 PLB1Q6P1J6 1458 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 BMP2KLQ5H9B9 411 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 CCDC83Q8IWF9 413 aa16.25■□□□□ 0.19
RTN4-202ENST00000337526 F6X3S4 739 aa16.24■□□□□ 0.19
RTN4-202ENST00000337526 PIP4K2AP48426 406 aaPredicted RBP16.24■□□□□ 0.19
RTN4-202ENST00000337526 DDX11Q96FC9 970 aa16.24■□□□□ 0.19
RTN4-202ENST00000337526 CCDC43Q96MW1 224 aaKnown RBP16.24■□□□□ 0.19
RTN4-202ENST00000337526 CTDP1Q9Y5B0 961 aaPredicted RBP16.24■□□□□ 0.19
RTN4-202ENST00000337526 NME9Q86XW9 330 aa16.24■□□□□ 0.19
RTN4-202ENST00000337526 PATL2C9JE40 543 aaKnown RBP16.23■□□□□ 0.19
RTN4-202ENST00000337526 EPS15P42566 896 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 NOM1Q5C9Z4 860 aaKnown RBP16.23■□□□□ 0.19
RTN4-202ENST00000337526 NACAP1Q9BZK3 213 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 CTNNA3Q9UI47 895 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 STK11IPQ8N1F8 1099 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 DISP3Q9P2K9 1392 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 RAB11FIP3O75154 756 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 PRPF40BQ6NWY9 871 aaKnown RBP16.23■□□□□ 0.19
RTN4-202ENST00000337526 SPG7Q9UQ90 795 aa16.23■□□□□ 0.19
RTN4-202ENST00000337526 TBC1D9Q6ZT07 1266 aa16.22■□□□□ 0.19
RTN4-202ENST00000337526 FAM177A1Q8N128 213 aaPredicted RBP16.22■□□□□ 0.19
RTN4-202ENST00000337526 PPFIBP1Q86W92 1011 aa16.22■□□□□ 0.19
RTN4-202ENST00000337526 MAGEC2Q9UBF1 373 aaPredicted RBP16.22■□□□□ 0.19
RTN4-202ENST00000337526 CUL7Q14999 1698 aa16.22■□□□□ 0.19
RTN4-202ENST00000337526 SAMD1Q6SPF0 538 aaPredicted RBP16.22■□□□□ 0.19
RTN4-202ENST00000337526 STRN4Q9NRL3 753 aa16.22■□□□□ 0.19
RTN4-202ENST00000337526 SLC3A2P08195 630 aaKnown RBP16.21■□□□□ 0.19
RTN4-202ENST00000337526 DDX54Q8TDD1 881 aaKnown RBP16.21■□□□□ 0.19
RTN4-202ENST00000337526 CWC15Q9P013 229 aaKnown RBP16.21■□□□□ 0.19
RTN4-202ENST00000337526 CAMK4Q16566 473 aa16.21■□□□□ 0.19
RTN4-202ENST00000337526 CT47A1Q5JQC4 288 aaPredicted RBP16.21■□□□□ 0.18
RTN4-202ENST00000337526 DACH1Q9UI36 760 aa16.21■□□□□ 0.18
RTN4-202ENST00000337526 WDR62O43379 1518 aa16.2■□□□□ 0.18
RTN4-202ENST00000337526 SCAND2PQ9GZW5 306 aaPredicted RBP16.2■□□□□ 0.18
RTN4-202ENST00000337526 ZSCAN25Q6NSZ9 544 aa16.2■□□□□ 0.18
RTN4-202ENST00000337526 CCDC69A6NI79 296 aa16.2■□□□□ 0.18
RTN4-202ENST00000337526 TAF7Q15545 349 aaPredicted RBP16.2■□□□□ 0.18
RTN4-202ENST00000337526 PCDHB15Q9Y5E8 787 aa16.2■□□□□ 0.18
RTN4-202ENST00000337526 CDKL5O76039 1030 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 NUP133Q8WUM0 1156 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 BOLA2Q9H3K6 86 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 ZNHIT6Q9NWK9 470 aaKnown RBP16.19■□□□□ 0.18
RTN4-202ENST00000337526 TOM1L2Q6ZVM7 507 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 GNL3LQ9NVN8 582 aaKnown RBP16.19■□□□□ 0.18
RTN4-202ENST00000337526 SCAF11Q99590 1463 aaKnown RBP16.19■□□□□ 0.18
RTN4-202ENST00000337526 CCDC183Q5T5S1 534 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 CBFA2T2O43439 604 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 CDK5RAP3Q96JB5 506 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 MPHOSPH8Q99549 860 aa16.19■□□□□ 0.18
RTN4-202ENST00000337526 SH2B1Q9NRF2 756 aaPredicted RBP16.18■□□□□ 0.18
RTN4-202ENST00000337526 LIMCH1Q9UPQ0 1083 aa16.18■□□□□ 0.18
RTN4-202ENST00000337526 LRRFIP2Q9Y608 721 aaKnown RBP16.18■□□□□ 0.18
RTN4-202ENST00000337526 KIF21AQ7Z4S6 1674 aa16.18■□□□□ 0.18
RTN4-202ENST00000337526 PRM3Q9NNZ6 103 aa16.18■□□□□ 0.18
RTN4-202ENST00000337526 IDI1Q13907 227 aa16.18■□□□□ 0.18
RTN4-202ENST00000337526 BAG4O95429 457 aaKnown RBP16.18■□□□□ 0.18
RTN4-202ENST00000337526 MAPKBP1O60336 1514 aa16.17■□□□□ 0.18
RTN4-202ENST00000337526 XPCQ01831 940 aaPredicted RBP16.17■□□□□ 0.18
RTN4-202ENST00000337526 H0YHG0 523 aa16.17■□□□□ 0.18
RTN4-202ENST00000337526 IKQ13123 557 aaPredicted RBP16.17■□□□□ 0.18
RTN4-202ENST00000337526 AXDND1Q5T1B0 1012 aaPredicted RBP16.17■□□□□ 0.18
RTN4-202ENST00000337526 GDPD2Q9HCC8 539 aa16.17■□□□□ 0.18
RTN4-202ENST00000337526 CD109Q6YHK3 1445 aa16.16■□□□□ 0.18
RTN4-202ENST00000337526 CCAR1Q8IX12 1150 aaKnown RBP16.16■□□□□ 0.18
RTN4-202ENST00000337526 U3KPZ7 1027 aaPredicted RBP16.16■□□□□ 0.18
RTN4-202ENST00000337526 PTPRKQ15262 1439 aa16.16■□□□□ 0.18
RTN4-202ENST00000337526 USP25Q9UHP3 1055 aa16.16■□□□□ 0.18
RTN4-202ENST00000337526 SMTNL1A8MU46 457 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms