RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 STAC3Q96MF2 364 aa21.67■■□□□ 1.06
CTHRC1-201ENST00000330295 NMRK2Q9NPI5 230 aa21.67■■□□□ 1.06
CTHRC1-201ENST00000330295 CCNL1Q9UK58 526 aaPredicted RBP21.67■■□□□ 1.06
CTHRC1-201ENST00000330295 ERBB3P21860 1342 aa21.66■■□□□ 1.06
CTHRC1-201ENST00000330295 SYTL4Q96C24 671 aaPredicted RBP21.65■■□□□ 1.06
CTHRC1-201ENST00000330295 PRIM1P49642 420 aaKnown RBP21.63■■□□□ 1.05
CTHRC1-201ENST00000330295 PCDH10Q9P2E7 1040 aa21.63■■□□□ 1.05
CTHRC1-201ENST00000330295 NSD2O96028 1365 aa21.62■■□□□ 1.05
CTHRC1-201ENST00000330295 ANKRD36BQ8N2N9 1353 aa21.62■■□□□ 1.05
CTHRC1-201ENST00000330295 FSTL1Q12841 308 aa21.62■■□□□ 1.05
CTHRC1-201ENST00000330295 DDX54Q8TDD1 881 aaKnown RBP21.62■■□□□ 1.05
CTHRC1-201ENST00000330295 TTC21BQ7Z4L5 1316 aa21.61■■□□□ 1.05
CTHRC1-201ENST00000330295 DOT1LQ8TEK3 1739 aa21.61■■□□□ 1.05
CTHRC1-201ENST00000330295 C16orf71Q8IYS4 520 aaPredicted RBP21.61■■□□□ 1.05
CTHRC1-201ENST00000330295 HSPA1AP0DMV8 641 aaKnown RBP21.59■■□□□ 1.05
CTHRC1-201ENST00000330295 HSPA1BP0DMV9 641 aaKnown RBP21.59■■□□□ 1.05
CTHRC1-201ENST00000330295 FLAD1Q8NFF5 587 aa21.59■■□□□ 1.05
CTHRC1-201ENST00000330295 C5P01031 1676 aa21.58■■□□□ 1.05
CTHRC1-201ENST00000330295 USP54Q70EL1 1684 aa21.56■■□□□ 1.04
CTHRC1-201ENST00000330295 TTC21AQ8NDW8 1320 aa21.56■■□□□ 1.04
CTHRC1-201ENST00000330295 CENPJQ9HC77 1338 aaPredicted RBP21.55■■□□□ 1.04
CTHRC1-201ENST00000330295 ANKRD24Q8TF21 1146 aa21.55■■□□□ 1.04
CTHRC1-201ENST00000330295 USP47Q96K76 1375 aa21.55■■□□□ 1.04
CTHRC1-201ENST00000330295 KIAA1210Q9ULL0 1709 aa21.53■■□□□ 1.04
CTHRC1-201ENST00000330295 ZNF692Q9BU19 519 aaPredicted RBP21.53■■□□□ 1.04
CTHRC1-201ENST00000330295 LTN1O94822 1766 aa21.53■■□□□ 1.04
CTHRC1-201ENST00000330295 TAF1LQ8IZX4 1826 aa21.5■■□□□ 1.03
CTHRC1-201ENST00000330295 HMGB2P26583 209 aaKnown RBP21.49■■□□□ 1.03
CTHRC1-201ENST00000330295 PLEKHG2Q9H7P9 1386 aa21.48■■□□□ 1.03
CTHRC1-201ENST00000330295 BCS1LQ9Y276 419 aa21.48■■□□□ 1.03
CTHRC1-201ENST00000330295 C10orf71Q711Q0 1435 aa21.47■■□□□ 1.03
CTHRC1-201ENST00000330295 PXDNLA1KZ92 1463 aa21.47■■□□□ 1.03
CTHRC1-201ENST00000330295 TOGARAM1Q9Y4F4 1720 aa21.47■■□□□ 1.03
CTHRC1-201ENST00000330295 NBPF1Q3BBV0 1214 aa21.47■■□□□ 1.03
CTHRC1-201ENST00000330295 ARHGAP27Q6ZUM4 889 aa21.47■■□□□ 1.03
CTHRC1-201ENST00000330295 KIAA1551Q9HCM1 1747 aa21.46■■□□□ 1.03
CTHRC1-201ENST00000330295 KCPQ6ZWJ8 1503 aa21.45■■□□□ 1.02
CTHRC1-201ENST00000330295 AMIGO3Q86WK7 504 aa21.45■■□□□ 1.02
CTHRC1-201ENST00000330295 SMC1BQ8NDV3 1235 aa21.45■■□□□ 1.02
CTHRC1-201ENST00000330295 C4BP0C0L5 1744 aa21.45■■□□□ 1.02
CTHRC1-201ENST00000330295 KDM2BQ8NHM5 1336 aa21.45■■□□□ 1.02
CTHRC1-201ENST00000330295 FAM208AQ9UK61 1670 aaKnown RBP21.44■■□□□ 1.02
CTHRC1-201ENST00000330295 N4BP2Q86UW6 1770 aaPredicted RBP21.44■■□□□ 1.02
CTHRC1-201ENST00000330295 KIF13BQ9NQT8 1826 aa21.44■■□□□ 1.02
CTHRC1-201ENST00000330295 UBR3Q6ZT12 1888 aa21.44■■□□□ 1.02
CTHRC1-201ENST00000330295 C9orf131Q5VYM1 1079 aa21.44■■□□□ 1.02
CTHRC1-201ENST00000330295 USP31Q70CQ4 1352 aa21.44■■□□□ 1.02
CTHRC1-201ENST00000330295 AK7Q96M32 723 aa21.43■■□□□ 1.02
CTHRC1-201ENST00000330295 KTN1Q86UP2 1357 aaKnown RBP21.43■■□□□ 1.02
CTHRC1-201ENST00000330295 PKD1L3Q7Z443 1732 aa21.43■■□□□ 1.02
CTHRC1-201ENST00000330295 PHF14O94880 888 aa21.42■■□□□ 1.02
CTHRC1-201ENST00000330295 EVC2Q86UK5 1308 aa21.42■■□□□ 1.02
CTHRC1-201ENST00000330295 RRAGCQ9HB90 399 aa21.42■■□□□ 1.02
CTHRC1-201ENST00000330295 TNRC6CQ9HCJ0 1690 aaKnown RBP21.42■■□□□ 1.02
CTHRC1-201ENST00000330295 NSD3Q9BZ95 1437 aa21.41■■□□□ 1.02
CTHRC1-201ENST00000330295 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.41■■□□□ 1.02
CTHRC1-201ENST00000330295 ZCRB1Q8TBF4 217 aaKnown RBP21.41■■□□□ 1.02
CTHRC1-201ENST00000330295 PALLDQ8WX93 1383 aa21.4■■□□□ 1.02
CTHRC1-201ENST00000330295 TGFB2P61812 414 aa21.4■■□□□ 1.02
CTHRC1-201ENST00000330295 SMIM5Q71RC9 77 aa21.4■■□□□ 1.02
CTHRC1-201ENST00000330295 MON2Q7Z3U7 1717 aa21.39■■□□□ 1.01
CTHRC1-201ENST00000330295 A0A0G2JLW4 131 aa21.38■■□□□ 1.01
CTHRC1-201ENST00000330295 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.38■■□□□ 1.01
CTHRC1-201ENST00000330295 FCHSD2O94868 740 aa21.37■■□□□ 1.01
CTHRC1-201ENST00000330295 SSFA2P28290 1259 aa21.37■■□□□ 1.01
CTHRC1-201ENST00000330295 FAM161AQ3B820 660 aa21.37■■□□□ 1.01
CTHRC1-201ENST00000330295 LTV1Q96GA3 475 aaPredicted RBP21.37■■□□□ 1.01
CTHRC1-201ENST00000330295 MEGF6O75095 1541 aa21.36■■□□□ 1.01
CTHRC1-201ENST00000330295 NME9Q86XW9 330 aa21.36■■□□□ 1.01
CTHRC1-201ENST00000330295 BRCA1P38398 1863 aaKnown RBP21.36■■□□□ 1.01
CTHRC1-201ENST00000330295 MMP10P09238 476 aa21.35■■□□□ 1.01
CTHRC1-201ENST00000330295 IP6K1Q92551 441 aa21.35■■□□□ 1.01
CTHRC1-201ENST00000330295 ARFGEF1Q9Y6D6 1849 aa21.34■■□□□ 1.01
CTHRC1-201ENST00000330295 DPEP1P16444 411 aa21.32■■□□□ 1
CTHRC1-201ENST00000330295 RNF181Q9P0P0 153 aa21.32■■□□□ 1
CTHRC1-201ENST00000330295 PRDM10Q9NQV6 1147 aa21.31■■□□□ 1
CTHRC1-201ENST00000330295 RGPD2P0DJD1 1756 aa21.31■■□□□ 1
CTHRC1-201ENST00000330295 FOXN1O15353 648 aa21.29■■□□□ 1
CTHRC1-201ENST00000330295 MPRIPQ6WCQ1 1025 aa21.29■■□□□ 1
CTHRC1-201ENST00000330295 SMARCC1Q92922 1105 aaPredicted RBP21.29■■□□□ 1
CTHRC1-201ENST00000330295 RAB3GAP2Q9H2M9 1393 aa21.28■■□□□ 1
CTHRC1-201ENST00000330295 SBNO2Q9Y2G9 1366 aa21.28■■□□□ 1
CTHRC1-201ENST00000330295 SBF1O95248 1867 aa21.27■■□□□ 1
CTHRC1-201ENST00000330295 LINC00116Q8NCU8 138 aa21.26■□□□□ 0.99
CTHRC1-201ENST00000330295 CGNL1Q0VF96 1302 aa21.26■□□□□ 0.99
CTHRC1-201ENST00000330295 GNPATO15228 680 aa21.25■□□□□ 0.99
CTHRC1-201ENST00000330295 DCAF5Q96JK2 942 aa21.25■□□□□ 0.99
CTHRC1-201ENST00000330295 CCDC87Q9NVE4 849 aa21.25■□□□□ 0.99
CTHRC1-201ENST00000330295 MAP2P11137 1827 aaKnown RBP21.25■□□□□ 0.99
CTHRC1-201ENST00000330295 ITGB4P16144 1822 aa21.25■□□□□ 0.99
CTHRC1-201ENST00000330295 VEGFAP15692 232 aaPredicted RBP21.24■□□□□ 0.99
CTHRC1-201ENST00000330295 KCNA3P22001 575 aa21.24■□□□□ 0.99
CTHRC1-201ENST00000330295 PIM2Q9P1W9 311 aa21.23■□□□□ 0.99
CTHRC1-201ENST00000330295 C4AP0C0L4 1744 aa21.23■□□□□ 0.99
CTHRC1-201ENST00000330295 CD163L1Q9NR16 1453 aa21.22■□□□□ 0.99
CTHRC1-201ENST00000330295 NLGN1Q8N2Q7 840 aa21.22■□□□□ 0.99
CTHRC1-201ENST00000330295 MKRN1Q9UHC7 482 aaKnown RBP21.22■□□□□ 0.99
CTHRC1-201ENST00000330295 PCDH11XQ9BZA7 1347 aa21.22■□□□□ 0.99
CTHRC1-201ENST00000330295 PCDH11YQ9BZA8 1340 aa21.22■□□□□ 0.99
CTHRC1-201ENST00000330295 ZC3H4Q9UPT8 1303 aaKnown RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms