RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SMARCC1Q92922 1105 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-201ENST00000328333 FAM114A1Q8IWE2 563 aa16.65■□□□□ 0.26
COL7A1-201ENST00000328333 TSPYL4Q9UJ04 414 aa16.65■□□□□ 0.26
COL7A1-201ENST00000328333 TUBBP07437 444 aa16.65■□□□□ 0.26
COL7A1-201ENST00000328333 SREK1Q8WXA9 508 aaKnown RBP16.65■□□□□ 0.26
COL7A1-201ENST00000328333 MROH2BQ7Z745 1585 aa16.65■□□□□ 0.26
COL7A1-201ENST00000328333 CCDC171Q6TFL3 1326 aa16.65■□□□□ 0.26
COL7A1-201ENST00000328333 SSR1P43307 286 aaKnown RBP16.65■□□□□ 0.26
COL7A1-201ENST00000328333 CEP112Q8N8E3 955 aa16.65■□□□□ 0.26
COL7A1-201ENST00000328333 PYM1Q9BRP8 204 aaKnown RBP16.65■□□□□ 0.26
COL7A1-201ENST00000328333 EIF5P55010 431 aaKnown RBP16.65■□□□□ 0.26
COL7A1-201ENST00000328333 IRX3P78415 501 aaPredicted RBP16.64■□□□□ 0.26
COL7A1-201ENST00000328333 WDR66Q8TBY9 1149 aa16.64■□□□□ 0.25
COL7A1-201ENST00000328333 USO1O60763 962 aaKnown RBP16.64■□□□□ 0.25
COL7A1-201ENST00000328333 SRRTQ9BXP5 876 aaKnown RBP16.64■□□□□ 0.25
COL7A1-201ENST00000328333 CCDC9Q9Y3X0 531 aaKnown RBP16.64■□□□□ 0.25
COL7A1-201ENST00000328333 GTF2A1P52655 376 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-201ENST00000328333 PAF1Q8N7H5 531 aa16.64■□□□□ 0.25
COL7A1-201ENST00000328333 HOOK3Q86VS8 718 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 HS1BP3Q53T59 392 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 FKBP15Q5T1M5 1219 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 PAFAH1B1P43034 410 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 CCDC150Q8NCX0 1101 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 SYCE3A1L190 88 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 SWAP70Q9UH65 585 aa16.63■□□□□ 0.25
COL7A1-201ENST00000328333 DDX46Q7L014 1031 aaKnown RBP16.62■□□□□ 0.25
COL7A1-201ENST00000328333 TANGO6Q9C0B7 1094 aa16.62■□□□□ 0.25
COL7A1-201ENST00000328333 FOSBP53539 338 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 TTC14Q96N46 770 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 ELL2O00472 640 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-201ENST00000328333 FAM177A1Q8N128 213 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-201ENST00000328333 AKNAQ7Z591 1439 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 EIF2S2P20042 333 aaKnown RBP16.61■□□□□ 0.25
COL7A1-201ENST00000328333 CPSF2Q9P2I0 782 aaKnown RBP16.61■□□□□ 0.25
COL7A1-201ENST00000328333 A6NNZ2 444 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 TUBB8Q3ZCM7 444 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 GAS2L2Q8NHY3 880 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 CLIP2Q9UDT6 1046 aa16.61■□□□□ 0.25
COL7A1-201ENST00000328333 NKTRP30414 1462 aaKnown RBP16.61■□□□□ 0.25
COL7A1-201ENST00000328333 KIF20AO95235 890 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 CCDC69A6NI79 296 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 ARFGAP3Q9NP61 516 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 BLOC1S2Q6QNY1 142 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 WDR63Q8IWG1 891 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 NEUROD6Q96NK8 337 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 DAAM2Q86T65 1068 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 PLVAPQ9BX97 442 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 LRRC9Q6ZRR7 1453 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 STX1AQ16623 288 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 GOLIM4O00461 696 aa16.6■□□□□ 0.25
COL7A1-201ENST00000328333 TOP1P11387 765 aaKnown RBP16.6■□□□□ 0.25
COL7A1-201ENST00000328333 ANAPC15P60006 121 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 PPP4R3BQ5MIZ7 849 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 CKAP4Q07065 602 aaKnown RBP16.59■□□□□ 0.25
COL7A1-201ENST00000328333 FYB1O15117 783 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 AEBP2Q6ZN18 517 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-201ENST00000328333 HFM1A2PYH4 1435 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 SH3BGRP55822 239 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-201ENST00000328333 TMEM132AQ24JP5 1023 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 RIC3Q7Z5B4 369 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 DAPK1P53355 1430 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 UVSSAQ2YD98 709 aa16.59■□□□□ 0.25
COL7A1-201ENST00000328333 LTV1Q96GA3 475 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-201ENST00000328333 GSTTP1A0A1W2PQM5 241 aa16.58■□□□□ 0.25
COL7A1-201ENST00000328333 TICAM2Q86XR7 235 aa16.58■□□□□ 0.25
COL7A1-201ENST00000328333 CCDC196A0A1B0GTZ2 297 aa16.58■□□□□ 0.24
COL7A1-201ENST00000328333 IFI16Q16666 785 aaKnown RBP16.58■□□□□ 0.24
COL7A1-201ENST00000328333 TRAK1Q9UPV9 953 aa16.58■□□□□ 0.24
COL7A1-201ENST00000328333 CCDC158Q5M9N0 1113 aa16.58■□□□□ 0.24
COL7A1-201ENST00000328333 YEATS4O95619 227 aa16.58■□□□□ 0.24
COL7A1-201ENST00000328333 GPATCH11Q8N954 259 aa16.58■□□□□ 0.24
COL7A1-201ENST00000328333 RAB34Q9BZG1 259 aa16.58■□□□□ 0.24
COL7A1-201ENST00000328333 AK9Q5TCS8 1911 aa16.57■□□□□ 0.24
COL7A1-201ENST00000328333 FSD2A1L4K1 749 aa16.57■□□□□ 0.24
COL7A1-201ENST00000328333 HMGB1P09429 215 aaKnown RBP16.57■□□□□ 0.24
COL7A1-201ENST00000328333 MVPQ14764 893 aaKnown RBP16.57■□□□□ 0.24
COL7A1-201ENST00000328333 MSL1Q68DK7 614 aa16.57■□□□□ 0.24
COL7A1-201ENST00000328333 DDX19AQ9NUU7 478 aaKnown RBP16.57■□□□□ 0.24
COL7A1-201ENST00000328333 RNF187Q5TA31 235 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-201ENST00000328333 ZNF287Q9HBT7 754 aa16.57■□□□□ 0.24
COL7A1-201ENST00000328333 U3KPZ7 1027 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-201ENST00000328333 CHD1LQ86WJ1 897 aa16.57■□□□□ 0.24
COL7A1-201ENST00000328333 CBX1P83916 185 aa16.56■□□□□ 0.24
COL7A1-201ENST00000328333 TSG101Q99816 390 aa16.56■□□□□ 0.24
COL7A1-201ENST00000328333 DNAJC21Q5F1R6 531 aaKnown RBP16.56■□□□□ 0.24
COL7A1-201ENST00000328333 SEPT11Q9NVA2 429 aaKnown RBP16.56■□□□□ 0.24
COL7A1-201ENST00000328333 FERMT1Q9BQL6 677 aa16.56■□□□□ 0.24
COL7A1-201ENST00000328333 PDZRN3Q9UPQ7 1066 aa16.56■□□□□ 0.24
COL7A1-201ENST00000328333 SURF6O75683 361 aaKnown RBP16.56■□□□□ 0.24
COL7A1-201ENST00000328333 KIF4BQ2VIQ3 1234 aa16.55■□□□□ 0.24
COL7A1-201ENST00000328333 BCL11BQ9C0K0 894 aaPredicted RBP16.55■□□□□ 0.24
COL7A1-201ENST00000328333 MLECQ14165 292 aa16.55■□□□□ 0.24
COL7A1-201ENST00000328333 RSRC1Q96IZ7 334 aaKnown RBP16.55■□□□□ 0.24
COL7A1-201ENST00000328333 ATAD2Q6PL18 1390 aa16.55■□□□□ 0.24
COL7A1-201ENST00000328333 PDRG1Q9NUG6 133 aa16.55■□□□□ 0.24
COL7A1-201ENST00000328333 TNNT1P13805 278 aa16.55■□□□□ 0.24
COL7A1-201ENST00000328333 CECR2Q9BXF3 1484 aa16.55■□□□□ 0.24
COL7A1-201ENST00000328333 CEBPZQ03701 1054 aaKnown RBP16.54■□□□□ 0.24
COL7A1-201ENST00000328333 CETN1Q12798 172 aa16.54■□□□□ 0.24
COL7A1-201ENST00000328333 IKQ13123 557 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms