RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 USP5P45974 858 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 BCAR3O75815 825 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 EIF5P55010 431 aaKnown RBP9.26□□□□□ -0.93
CIITA-201ENST00000324288 TTC16Q8NEE8 873 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 NEBLO76041 1014 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 BICDL1Q6ZP65 573 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 GNL3LQ9NVN8 582 aaKnown RBP9.25□□□□□ -0.93
CIITA-201ENST00000324288 MPHOSPH10O00566 681 aaKnown RBP9.25□□□□□ -0.93
CIITA-201ENST00000324288 MYCNP04198 464 aaPredicted RBP9.25□□□□□ -0.93
CIITA-201ENST00000324288 FERMT3Q86UX7 667 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 AACSQ86V21 672 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 SMARCA5O60264 1052 aaPredicted RBP9.25□□□□□ -0.93
CIITA-201ENST00000324288 PRKAR2BP31323 418 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 MAP3K11Q16584 847 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 TIGD1Q96MW7 591 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 SMARCA2P51531 1590 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 IRX3P78415 501 aaPredicted RBP9.25□□□□□ -0.93
CIITA-201ENST00000324288 KIF4BQ2VIQ3 1234 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 ESCO1Q5FWF5 840 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 CCDC91Q7Z6B0 441 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 TRIM22Q8IYM9 498 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 ARHGAP29Q52LW3 1261 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 CCDC30Q5VVM6 783 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 CEP57L1Q8IYX8 460 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 KIF18AQ8NI77 898 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 ANKRD18AQ8IVF6 992 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 CTNNBL1Q8WYA6 563 aaPredicted RBP9.25□□□□□ -0.93
CIITA-201ENST00000324288 PDRG1Q9NUG6 133 aa9.25□□□□□ -0.93
CIITA-201ENST00000324288 TDO2P48775 406 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 IQCEQ6IPM2 695 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 CYP46A1Q9Y6A2 500 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 CCDC7Q96M83 1385 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 MTHFSP49914 203 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 CCDC178Q5BJE1 867 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 CCDC158Q5M9N0 1113 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 EXOSC9Q06265 439 aaKnown RBP9.24□□□□□ -0.93
CIITA-201ENST00000324288 CTR9Q6PD62 1173 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 GNAI2P04899 355 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 CWC27Q6UX04 472 aaKnown RBP9.24□□□□□ -0.93
CIITA-201ENST00000324288 ZNF76P36508 570 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 DHX8Q14562 1220 aaKnown RBP9.24□□□□□ -0.93
CIITA-201ENST00000324288 ZSCAN29Q8IWY8 852 aaPredicted RBP9.24□□□□□ -0.93
CIITA-201ENST00000324288 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.24□□□□□ -0.93
CIITA-201ENST00000324288 MIA2Q96PC5 1412 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 RNF216Q9NWF9 866 aaPredicted RBP9.24□□□□□ -0.93
CIITA-201ENST00000324288 SLC4A2P04920 1241 aa9.24□□□□□ -0.93
CIITA-201ENST00000324288 SOGA3Q5TF21 947 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 CPLX3Q8WVH0 158 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 GDPD2Q9HCC8 539 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 SFPQP23246 707 aaKnown RBP eCLIP9.23□□□□□ -0.93
CIITA-201ENST00000324288 TCP11L2Q8N4U5 519 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 USP25Q9UHP3 1055 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 MPHOSPH8Q99549 860 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 UBA5Q9GZZ9 404 aa9.23□□□□□ -0.93
CIITA-201ENST00000324288 MCM2P49736 904 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 LUZP1Q86V48 1076 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 LARP6Q9BRS8 491 aaKnown RBP9.22□□□□□ -0.93
CIITA-201ENST00000324288 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.22□□□□□ -0.93
CIITA-201ENST00000324288 V9GYY5 206 aaPredicted RBP9.22□□□□□ -0.93
CIITA-201ENST00000324288 TWISTNBQ3B726 338 aaPredicted RBP9.22□□□□□ -0.93
CIITA-201ENST00000324288 HDGFL1Q5TGJ6 251 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 MAATS1Q7Z4T9 603 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 MACROD2A1Z1Q3 448 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 CCDC183Q5T5S1 534 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 GSTTP1A0A1W2PQM5 241 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 GUCY1B3Q02153 619 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 PDS5BQ9NTI5 1447 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 CKAP2LQ8IYA6 745 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 LUC7LQ9NQ29 371 aaKnown RBP9.22□□□□□ -0.93
CIITA-201ENST00000324288 JPH4Q96JJ6 628 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 RSPH14Q9UHP6 348 aa9.22□□□□□ -0.93
CIITA-201ENST00000324288 VGLL3A8MV65 326 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 HIP1O00291 1037 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 UBAC1Q9BSL1 405 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 GNAI3P08754 354 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 NACAP1Q9BZK3 213 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 CCDC175P0C221 793 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 TMC6Q7Z403 805 aa9.21□□□□□ -0.93
CIITA-201ENST00000324288 DCAF8L1A6NGE4 600 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 TMCO5BA8MYB1 307 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 PIP4K2AP48426 406 aaPredicted RBP9.21□□□□□ -0.94
CIITA-201ENST00000324288 ZNF644Q9H582 1327 aaPredicted RBP9.21□□□□□ -0.94
CIITA-201ENST00000324288 BIN1O00499 593 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 CASTP20810 708 aaKnown RBP9.21□□□□□ -0.94
CIITA-201ENST00000324288 CABP4P57796 275 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 DACH1Q9UI36 760 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 MROH2BQ7Z745 1585 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 ERC1Q8IUD2 1116 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 MIS18AQ9NYP9 233 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 CCDC96Q2M329 555 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 NUTM1Q86Y26 1132 aa9.21□□□□□ -0.94
CIITA-201ENST00000324288 SCLT1Q96NL6 688 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 KIF5CO60282 957 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 MAP9Q49MG5 647 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 MICALCLQ6ZW33 695 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 IL1RAPL2Q9NP60 686 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 SETD1BQ9UPS6 1966 aaKnown RBP9.2□□□□□ -0.94
CIITA-201ENST00000324288 ANAPC15P60006 121 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 TRMT1LQ7Z2T5 733 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms