RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 COG6Q9Y2V7 657 aa20.13■□□□□ 0.81
USH1C-202ENST00000318024 LRRC59Q96AG4 307 aaKnown RBP20.12■□□□□ 0.81
USH1C-202ENST00000318024 NBPF6Q5VWK0 638 aa20.12■□□□□ 0.81
USH1C-202ENST00000318024 NBPF4Q96M43 638 aa20.12■□□□□ 0.81
USH1C-202ENST00000318024 SPATA31A3Q5VYP0 1347 aa20.12■□□□□ 0.81
USH1C-202ENST00000318024 AAMPQ13685 434 aa20.11■□□□□ 0.81
USH1C-202ENST00000318024 BECN1Q14457 450 aa20.11■□□□□ 0.81
USH1C-202ENST00000318024 MTHFSDQ2M296 383 aaKnown RBP20.11■□□□□ 0.81
USH1C-202ENST00000318024 EXOSC9Q06265 439 aaKnown RBP20.11■□□□□ 0.81
USH1C-202ENST00000318024 BCL2L13Q9BXK5 485 aa20.11■□□□□ 0.81
USH1C-202ENST00000318024 RTL1A6NKG5 1358 aa20.11■□□□□ 0.81
USH1C-202ENST00000318024 TBC1D32Q96NH3 1257 aa20.1■□□□□ 0.81
USH1C-202ENST00000318024 LTN1O94822 1766 aa20.1■□□□□ 0.81
USH1C-202ENST00000318024 RGPD1P0DJD0 1748 aa20.1■□□□□ 0.81
USH1C-202ENST00000318024 MCM10Q7L590 875 aa20.1■□□□□ 0.81
USH1C-202ENST00000318024 PXDNQ92626 1479 aa20.1■□□□□ 0.81
USH1C-202ENST00000318024 UBE2Q2Q8WVN8 375 aa20.09■□□□□ 0.81
USH1C-202ENST00000318024 SLIT3O75094 1523 aa20.09■□□□□ 0.81
USH1C-202ENST00000318024 TNS3Q68CZ2 1445 aa20.09■□□□□ 0.81
USH1C-202ENST00000318024 KDRP35968 1356 aa20.09■□□□□ 0.81
USH1C-202ENST00000318024 RARSP54136 660 aaKnown RBP20.08■□□□□ 0.81
USH1C-202ENST00000318024 PCDHB15Q9Y5E8 787 aa20.08■□□□□ 0.81
USH1C-202ENST00000318024 IL16Q14005 1332 aa20.08■□□□□ 0.81
USH1C-202ENST00000318024 MED1Q15648 1581 aaPredicted RBP20.08■□□□□ 0.8
USH1C-202ENST00000318024 CHRNA2Q15822 529 aa20.07■□□□□ 0.8
USH1C-202ENST00000318024 ANKRD24Q8TF21 1146 aa20.07■□□□□ 0.8
USH1C-202ENST00000318024 ALS2Q96Q42 1657 aa20.07■□□□□ 0.8
USH1C-202ENST00000318024 LMOD3Q0VAK6 560 aa20.07■□□□□ 0.8
USH1C-202ENST00000318024 RLBP1P12271 317 aa20.06■□□□□ 0.8
USH1C-202ENST00000318024 TBC1D2Q9BYX2 928 aa20.06■□□□□ 0.8
USH1C-202ENST00000318024 SLKQ9H2G2 1235 aaPredicted RBP20.06■□□□□ 0.8
USH1C-202ENST00000318024 SOS2Q07890 1332 aaPredicted RBP20.05■□□□□ 0.8
USH1C-202ENST00000318024 RRAGDQ9NQL2 400 aaPredicted RBP20.04■□□□□ 0.8
USH1C-202ENST00000318024 MBIPQ9NS73 344 aa20.04■□□□□ 0.8
USH1C-202ENST00000318024 ELL2O00472 640 aaPredicted RBP20.03■□□□□ 0.8
USH1C-202ENST00000318024 CALD1Q05682 793 aaKnown RBP20.03■□□□□ 0.8
USH1C-202ENST00000318024 PDZRN3Q9UPQ7 1066 aa20.03■□□□□ 0.8
USH1C-202ENST00000318024 TNNQ9UQP3 1299 aa20.03■□□□□ 0.8
USH1C-202ENST00000318024 GNAI1P63096 354 aa20.03■□□□□ 0.8
USH1C-202ENST00000318024 L1TD1Q5T7N2 865 aaKnown RBP20.03■□□□□ 0.8
USH1C-202ENST00000318024 IFT57Q9NWB7 429 aa20.02■□□□□ 0.8
USH1C-202ENST00000318024 FSD2A1L4K1 749 aa20.02■□□□□ 0.79
USH1C-202ENST00000318024 CANXP27824 592 aaKnown RBP20.02■□□□□ 0.79
USH1C-202ENST00000318024 RTF1Q92541 710 aaKnown RBP20.02■□□□□ 0.79
USH1C-202ENST00000318024 CFAP44Q96MT7 982 aa20.02■□□□□ 0.79
USH1C-202ENST00000318024 DLG5Q8TDM6 1919 aa20.01■□□□□ 0.79
USH1C-202ENST00000318024 ZNF853P0CG23 659 aa20.01■□□□□ 0.79
USH1C-202ENST00000318024 HAP1P54257 671 aaPredicted RBP20.01■□□□□ 0.79
USH1C-202ENST00000318024 GAS2L2Q8NHY3 880 aa20.01■□□□□ 0.79
USH1C-202ENST00000318024 MIS18AQ9NYP9 233 aa20.01■□□□□ 0.79
USH1C-202ENST00000318024 KIAA0232Q92628 1395 aa20.01■□□□□ 0.79
USH1C-202ENST00000318024 TSPYL6Q8N831 410 aa20■□□□□ 0.79
USH1C-202ENST00000318024 ERBB3P21860 1342 aa19.99■□□□□ 0.79
USH1C-202ENST00000318024 SSH1Q8WYL5 1049 aa19.98■□□□□ 0.79
USH1C-202ENST00000318024 NLRP2Q9NX02 1062 aa19.98■□□□□ 0.79
USH1C-202ENST00000318024 GNAT3A8MTJ3 354 aa19.98■□□□□ 0.79
USH1C-202ENST00000318024 CSB-PGBD3P0DP91 1061 aa19.98■□□□□ 0.79
USH1C-202ENST00000318024 SMC4Q9NTJ3 1288 aa19.98■□□□□ 0.79
USH1C-202ENST00000318024 C8orf58Q8NAV2 365 aa19.96■□□□□ 0.79
USH1C-202ENST00000318024 RGPD2P0DJD1 1756 aa19.96■□□□□ 0.79
USH1C-202ENST00000318024 XRCC6P12956 609 aaKnown RBP eCLIP19.96■□□□□ 0.79
USH1C-202ENST00000318024 KRT24Q2M2I5 525 aa19.96■□□□□ 0.79
USH1C-202ENST00000318024 UPF2Q9HAU5 1272 aaKnown RBP19.96■□□□□ 0.79
USH1C-202ENST00000318024 PRDM11Q9NQV5 511 aa19.96■□□□□ 0.79
USH1C-202ENST00000318024 LTBP4Q8N2S1 1624 aa19.95■□□□□ 0.78
USH1C-202ENST00000318024 PHRF1Q9P1Y6 1649 aaKnown RBP19.95■□□□□ 0.78
USH1C-202ENST00000318024 EIF5BO60841 1220 aaKnown RBP19.95■□□□□ 0.78
USH1C-202ENST00000318024 CT47B1P0C2W7 299 aaPredicted RBP19.95■□□□□ 0.78
USH1C-202ENST00000318024 MCM4P33991 863 aa19.95■□□□□ 0.78
USH1C-202ENST00000318024 IL17REQ8NFR9 667 aa19.95■□□□□ 0.78
USH1C-202ENST00000318024 CHL1O00533 1208 aa19.94■□□□□ 0.78
USH1C-202ENST00000318024 RWDD1Q9H446 243 aaPredicted RBP19.94■□□□□ 0.78
USH1C-202ENST00000318024 VAMP4O75379 141 aa19.94■□□□□ 0.78
USH1C-202ENST00000318024 RGPD5Q99666 1765 aa19.93■□□□□ 0.78
USH1C-202ENST00000318024 CRB1P82279 1406 aa19.93■□□□□ 0.78
USH1C-202ENST00000318024 TWISTNBQ3B726 338 aaPredicted RBP19.92■□□□□ 0.78
USH1C-202ENST00000318024 PIP4K2BP78356 416 aa19.92■□□□□ 0.78
USH1C-202ENST00000318024 MVPQ14764 893 aaKnown RBP19.92■□□□□ 0.78
USH1C-202ENST00000318024 MAP3K5Q99683 1374 aa19.92■□□□□ 0.78
USH1C-202ENST00000318024 ZNF530Q6P9A1 599 aaPredicted RBP19.91■□□□□ 0.78
USH1C-202ENST00000318024 LGR6Q9HBX8 967 aa19.91■□□□□ 0.78
USH1C-202ENST00000318024 NOB1Q9ULX3 412 aaKnown RBP19.91■□□□□ 0.78
USH1C-202ENST00000318024 PLEKHO1Q53GL0 409 aaPredicted RBP19.91■□□□□ 0.78
USH1C-202ENST00000318024 TSPYL4Q9UJ04 414 aa19.91■□□□□ 0.78
USH1C-202ENST00000318024 CPDO75976 1380 aa19.9■□□□□ 0.78
USH1C-202ENST00000318024 HTATSF1O43719 755 aaKnown RBP19.9■□□□□ 0.78
USH1C-202ENST00000318024 MPRIPQ6WCQ1 1025 aa19.9■□□□□ 0.78
USH1C-202ENST00000318024 RAPGEF4Q8WZA2 1011 aa19.88■□□□□ 0.77
USH1C-202ENST00000318024 GOLGA6L3A6NEY3 463 aa19.88■□□□□ 0.77
USH1C-202ENST00000318024 ZKSCAN2Q63HK3 967 aa19.88■□□□□ 0.77
USH1C-202ENST00000318024 CHMP5Q9NZZ3 219 aa19.88■□□□□ 0.77
USH1C-202ENST00000318024 AMOTQ4VCS5 1084 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 C22orf23Q9BZE7 217 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 STRN4Q9NRL3 753 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 CRYBG1Q9Y4K1 1723 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 ROBO1Q9Y6N7 1651 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 DDIT3P35638 169 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 HDAC1Q13547 482 aaPredicted RBP19.87■□□□□ 0.77
USH1C-202ENST00000318024 ALDH1L2Q3SY69 923 aa19.87■□□□□ 0.77
USH1C-202ENST00000318024 COL18A1P39060 1754 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms