RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RPAP2Q8IXW5 612 aaPredicted RBP12.88□□□□□ -0.35
COL3A1-202ENST00000317840 MEIS3Q99687 375 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 GLI2P10070 1586 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 SDSP20132 328 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 IL13P35225 146 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 TSHZ3Q63HK5 1081 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 KCNA6P17658 529 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 RNF214Q8ND24 703 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 DCTPP1Q9H773 170 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 EXOC6BQ9Y2D4 811 aa12.87□□□□□ -0.35
COL3A1-202ENST00000317840 FKBP5Q13451 457 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-202ENST00000317840 CCDC173Q0VFZ6 552 aa12.86□□□□□ -0.35
COL3A1-202ENST00000317840 ABCC3O15438 1527 aa12.86□□□□□ -0.35
COL3A1-202ENST00000317840 METP08581 1390 aa12.86□□□□□ -0.35
COL3A1-202ENST00000317840 KIF2CQ99661 725 aa12.86□□□□□ -0.35
COL3A1-202ENST00000317840 SHPRHQ149N8 1683 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ZFYVE9O95405 1425 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ERC2O15083 957 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 PLCB2Q00722 1185 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 KLHL40Q2TBA0 621 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 MROH1Q8NDA8 1641 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ZC3H6P61129 1189 aaKnown RBP12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ZGPATQ8N5A5 531 aaKnown RBP12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ANKRD44Q8N8A2 993 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ABCC4O15439 1325 aa12.85□□□□□ -0.35
COL3A1-202ENST00000317840 ZNF330Q9Y3S2 320 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-202ENST00000317840 PKP1Q13835 747 aa12.84□□□□□ -0.35
COL3A1-202ENST00000317840 DNTTIP2Q5QJE6 756 aaKnown RBP12.84□□□□□ -0.35
COL3A1-202ENST00000317840 ARID3AQ99856 593 aa12.84□□□□□ -0.35
COL3A1-202ENST00000317840 KIDINS220Q9ULH0 1771 aa12.84□□□□□ -0.35
COL3A1-202ENST00000317840 VSIG10Q8N0Z9 540 aa12.84□□□□□ -0.35
COL3A1-202ENST00000317840 USP26Q9BXU7 913 aa12.84□□□□□ -0.35
COL3A1-202ENST00000317840 CEP85Q6P2H3 762 aa12.83□□□□□ -0.36
COL3A1-202ENST00000317840 RBM27Q9P2N5 1060 aaKnown RBP12.83□□□□□ -0.36
COL3A1-202ENST00000317840 LMTK2Q8IWU2 1503 aa12.83□□□□□ -0.36
COL3A1-202ENST00000317840 ATF3P18847 181 aa12.83□□□□□ -0.36
COL3A1-202ENST00000317840 HSPA2P54652 639 aa12.83□□□□□ -0.36
COL3A1-202ENST00000317840 CWC22Q9HCG8 908 aaKnown RBP12.83□□□□□ -0.36
COL3A1-202ENST00000317840 BRPF1P55201 1214 aaPredicted RBP12.82□□□□□ -0.36
COL3A1-202ENST00000317840 OS9Q13438 667 aaPredicted RBP12.82□□□□□ -0.36
COL3A1-202ENST00000317840 KIAA1211Q6ZU35 1233 aa12.82□□□□□ -0.36
COL3A1-202ENST00000317840 EIF4A2Q14240 407 aaKnown RBP12.82□□□□□ -0.36
COL3A1-202ENST00000317840 CHAMP1Q96JM3 812 aa12.82□□□□□ -0.36
COL3A1-202ENST00000317840 TTC21BQ7Z4L5 1316 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 SYCE3A1L190 88 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 ZSCAN30Q86W11 494 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 UBE2Q2Q8WVN8 375 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 UPF3BQ9BZI7 483 aaKnown RBP12.81□□□□□ -0.36
COL3A1-202ENST00000317840 NLRP2Q9NX02 1062 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 PNPLA6Q8IY17 1366 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 GNAI2P04899 355 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 NEURL4Q96JN8 1562 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 ZSCAN23Q3MJ62 389 aa12.81□□□□□ -0.36
COL3A1-202ENST00000317840 ERBB4Q15303 1308 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 FAM135BQ49AJ0 1406 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 ZNF853P0CG23 659 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 TEFQ10587 303 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 R3HCC1Q9Y3T6 440 aaKnown RBP12.8□□□□□ -0.36
COL3A1-202ENST00000317840 PHF8Q9UPP1 1060 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 MYO3AQ8NEV4 1616 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 MPNDQ8N594 471 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 IL1RAPL2Q9NP60 686 aa12.8□□□□□ -0.36
COL3A1-202ENST00000317840 LRRCC1Q9C099 1032 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 RIMBP3CA6NJZ7 1639 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 RIMBP3BA6NNM3 1639 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 RIMBP3Q9UFD9 1639 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 MSH6P52701 1360 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 DDIT3P35638 169 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 PRIM1P49642 420 aaKnown RBP12.79□□□□□ -0.36
COL3A1-202ENST00000317840 CCT4P50991 539 aaKnown RBP12.79□□□□□ -0.36
COL3A1-202ENST00000317840 G2E3Q7L622 706 aa12.79□□□□□ -0.36
COL3A1-202ENST00000317840 LRRC7Q96NW7 1537 aa12.78□□□□□ -0.36
COL3A1-202ENST00000317840 PDE1AP54750 535 aa12.78□□□□□ -0.36
COL3A1-202ENST00000317840 MAP4K4O95819 1239 aaPredicted RBP12.78□□□□□ -0.36
COL3A1-202ENST00000317840 SYAP1Q96A49 352 aaPredicted RBP12.78□□□□□ -0.36
COL3A1-202ENST00000317840 FAM13BQ9NYF5 915 aa12.78□□□□□ -0.36
COL3A1-202ENST00000317840 VIRMAQ69YN4 1812 aaKnown RBP12.78□□□□□ -0.36
COL3A1-202ENST00000317840 CFAP74Q9C0B2 1584 aa12.78□□□□□ -0.36
COL3A1-202ENST00000317840 TMEM2Q9UHN6 1383 aa12.77□□□□□ -0.36
COL3A1-202ENST00000317840 GDPD2Q9HCC8 539 aa12.77□□□□□ -0.36
COL3A1-202ENST00000317840 PTPRCP08575 1304 aa12.77□□□□□ -0.36
COL3A1-202ENST00000317840 RBM10P98175 930 aaKnown RBP12.77□□□□□ -0.37
COL3A1-202ENST00000317840 TMX3Q96JJ7 454 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 PPLO60437 1756 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 GNAI3P08754 354 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 MX1P20591 662 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 C1orf141Q5JVX7 400 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.77□□□□□ -0.37
COL3A1-202ENST00000317840 CAMSAP1Q5T5Y3 1602 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 PTCH1Q13635 1447 aa12.77□□□□□ -0.37
COL3A1-202ENST00000317840 NEXMIFQ5QGS0 1516 aa12.76□□□□□ -0.37
COL3A1-202ENST00000317840 CHL1O00533 1208 aa12.76□□□□□ -0.37
COL3A1-202ENST00000317840 COL3A1P02461 1466 aaPredicted RBP12.76□□□□□ -0.37
COL3A1-202ENST00000317840 ADGRB2O60241 1585 aa12.76□□□□□ -0.37
COL3A1-202ENST00000317840 SURF6O75683 361 aaKnown RBP12.76□□□□□ -0.37
COL3A1-202ENST00000317840 KCNJ4P48050 445 aa12.76□□□□□ -0.37
COL3A1-202ENST00000317840 LMBRD1Q9NUN5 540 aa12.76□□□□□ -0.37
COL3A1-202ENST00000317840 UBTFL1P0CB47 393 aaPredicted RBP12.76□□□□□ -0.37
COL3A1-202ENST00000317840 EDC4Q6P2E9 1401 aaKnown RBP12.76□□□□□ -0.37
COL3A1-202ENST00000317840 PTPRMP28827 1452 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms