RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 RSRC1Q96IZ7 334 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 IWS1Q96ST2 819 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 PRPF40AO75400 957 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 CHMP5Q9NZZ3 219 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 WRNQ14191 1432 aaPredicted RBP eCLIP8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 NBPF1Q3BBV0 1214 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 KIF6Q6ZMV9 814 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 DRC1Q96MC2 740 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 UBA5Q9GZZ9 404 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 USH1CQ9Y6N9 552 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 CCDC27Q2M243 656 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 SPDYE4A6NLX3 237 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 H0YC42 278 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 PPP1R14CQ8TAE6 165 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 TANGO6Q9C0B7 1094 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 PFDN1O60925 122 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 LACTBP83111 547 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 NUDCD3Q8IVD9 361 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 CLNS1AP54105 237 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 MTMR7Q9Y216 660 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 PPME1Q9Y570 386 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 BLVRAP53004 296 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 UTP14CQ5TAP6 766 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 NLRP9Q7RTR0 991 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 CTNNBL1Q8WYA6 563 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 NAT10Q9H0A0 1025 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 FKBP15Q5T1M5 1219 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 ANKRD24Q8TF21 1146 aa8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 NOL10Q9BSC4 688 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 SPATS2LQ9NUQ6 558 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-201ENST00000313860 ABTB1Q969K4 478 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 RILPL2Q969X0 211 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 SSBP05455 408 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 FAPQ12884 760 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 MAP7Q14244 749 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 CCDC92Q53HC0 331 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 RSPH14Q9UHP6 348 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 HSPA5P11021 654 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 PLCB4Q15147 1175 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 CCDC96Q2M329 555 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 ZSCAN31Q96LW9 406 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 STMN4Q9H169 189 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 PALMDQ9NP74 551 aa8.9□□□□□ -0.98
LIMCH1-201ENST00000313860 TMED1Q13445 227 aa8.9□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC110Q8TBZ0 833 aa8.9□□□□□ -0.99
LIMCH1-201ENST00000313860 TMX1Q9H3N1 280 aa8.9□□□□□ -0.99
LIMCH1-201ENST00000313860 CSB-PGBD3P0DP91 1061 aa8.9□□□□□ -0.99
LIMCH1-201ENST00000313860 UBE2Q2Q8WVN8 375 aa8.9□□□□□ -0.99
LIMCH1-201ENST00000313860 PPP1R15AO75807 674 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC172P0C7W6 258 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 DNA2P51530 1060 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 TERF1P54274 439 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 NUDCQ9Y266 331 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 AP1ARQ63HQ0 302 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 VCX3BQ9H321 246 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 SPECC1L-ADORA2AF8WAN1 911 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 OPA1O60313 960 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 NFXL1Q6ZNB6 911 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 LONP1P36776 959 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC178Q5BJE1 867 aa8.89□□□□□ -0.99
LIMCH1-201ENST00000313860 CPLX1O14810 134 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 FMNL1O95466 1100 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 PSMD6Q15008 389 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC89Q8N998 374 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 RTF1Q92541 710 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 ATG3Q9NT62 314 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 ANKFY1Q9P2R3 1169 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 LUC7L2Q9Y383 392 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 PPFIA3O75145 1194 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 SLU7O95391 586 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 TAF4BQ92750 862 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 LUC7LQ9NQ29 371 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 SPECC1Q5M775 1068 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 CENPQQ7L2Z9 268 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC125Q86Z20 511 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 MSANTD4Q8NCY6 345 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 DDX21Q9NR30 783 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 NDC80O14777 642 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 COG7P83436 770 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 ARMCX6Q7L4S7 300 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 CNPY4Q8N129 248 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 SSX2IPQ9Y2D8 614 aa8.88□□□□□ -0.99
LIMCH1-201ENST00000313860 KRT18P05783 430 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 PHLDB2Q86SQ0 1253 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 PPFIBP1Q86W92 1011 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 C6orf203Q9P0P8 240 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 MAP2K2P36507 400 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 FBLN2P98095 1184 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 SDCCAG8Q86SQ7 713 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 GFM2Q969S9 779 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 ZBTB9Q96C00 473 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 TSNARE1Q96NA8 513 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 RWDD1Q9H446 243 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 PCK1P35558 622 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 ANO2Q9NQ90 1003 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 SERPINC1P01008 464 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 HOOK3Q86VS8 718 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 MPP4Q96JB8 637 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 WHAMMP3Q1A5X7 153 aa8.87□□□□□ -0.99
LIMCH1-201ENST00000313860 SMARCC1Q92922 1105 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms