RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ACSBG1Q96GR2 724 aa22.45■■□□□ 1.18
LSM1-201ENST00000311351 DOT1LQ8TEK3 1739 aa22.45■■□□□ 1.18
LSM1-201ENST00000311351 KCNQ2O43526 872 aa22.44■■□□□ 1.18
LSM1-201ENST00000311351 LRP5O75197 1615 aa22.42■■□□□ 1.18
LSM1-201ENST00000311351 NSD2O96028 1365 aa22.42■■□□□ 1.18
LSM1-201ENST00000311351 DDX54Q8TDD1 881 aaKnown RBP22.42■■□□□ 1.18
LSM1-201ENST00000311351 POLKQ9UBT6 870 aa22.41■■□□□ 1.18
LSM1-201ENST00000311351 PLSCR1O15162 318 aa22.4■■□□□ 1.18
LSM1-201ENST00000311351 WASHC2AQ641Q2 1341 aa22.39■■□□□ 1.18
LSM1-201ENST00000311351 PKD1L3Q7Z443 1732 aa22.39■■□□□ 1.17
LSM1-201ENST00000311351 NCAPD2Q15021 1401 aa22.39■■□□□ 1.17
LSM1-201ENST00000311351 ZCRB1Q8TBF4 217 aaKnown RBP22.38■■□□□ 1.17
LSM1-201ENST00000311351 RAPGEF4Q8WZA2 1011 aa22.38■■□□□ 1.17
LSM1-201ENST00000311351 KNSTRNQ9Y448 316 aa22.37■■□□□ 1.17
LSM1-201ENST00000311351 PROM2Q8N271 834 aa22.36■■□□□ 1.17
LSM1-201ENST00000311351 ANO8Q9HCE9 1232 aaPredicted RBP22.36■■□□□ 1.17
LSM1-201ENST00000311351 TATP17735 454 aaPredicted RBP22.35■■□□□ 1.17
LSM1-201ENST00000311351 MORC1Q86VD1 984 aa22.35■■□□□ 1.17
LSM1-201ENST00000311351 NBPF14Q5TI25 921 aa22.34■■□□□ 1.17
LSM1-201ENST00000311351 EIF4A2Q14240 407 aaKnown RBP22.33■■□□□ 1.17
LSM1-201ENST00000311351 TXNRD1Q16881 649 aa22.33■■□□□ 1.17
LSM1-201ENST00000311351 AMER1Q5JTC6 1135 aaPredicted RBP22.33■■□□□ 1.17
LSM1-201ENST00000311351 PAPPAQ13219 1627 aa22.32■■□□□ 1.16
LSM1-201ENST00000311351 TOGARAM1Q9Y4F4 1720 aa22.32■■□□□ 1.16
LSM1-201ENST00000311351 EYA1Q99502 592 aa22.32■■□□□ 1.16
LSM1-201ENST00000311351 PCDH11XQ9BZA7 1347 aa22.31■■□□□ 1.16
LSM1-201ENST00000311351 PCDH11YQ9BZA8 1340 aa22.31■■□□□ 1.16
LSM1-201ENST00000311351 CASZ1Q86V15 1759 aa22.3■■□□□ 1.16
LSM1-201ENST00000311351 SYTL4Q96C24 671 aaPredicted RBP22.3■■□□□ 1.16
LSM1-201ENST00000311351 PRIM1P49642 420 aaKnown RBP22.29■■□□□ 1.16
LSM1-201ENST00000311351 LY75O60449 1722 aa22.28■■□□□ 1.16
LSM1-201ENST00000311351 CYP27B1O15528 508 aa22.27■■□□□ 1.16
LSM1-201ENST00000311351 PER1O15534 1290 aaPredicted RBP22.27■■□□□ 1.16
LSM1-201ENST00000311351 ITGB4P16144 1822 aa22.27■■□□□ 1.15
LSM1-201ENST00000311351 IGSF1Q8N6C5 1336 aa22.26■■□□□ 1.15
LSM1-201ENST00000311351 ADRA2BP18089 450 aa22.25■■□□□ 1.15
LSM1-201ENST00000311351 CC2D1BQ5T0F9 858 aaKnown RBP22.24■■□□□ 1.15
LSM1-201ENST00000311351 LRRC4BQ9NT99 713 aa22.23■■□□□ 1.15
LSM1-201ENST00000311351 CNGB1Q14028 1251 aaPredicted RBP22.22■■□□□ 1.15
LSM1-201ENST00000311351 PDGFDQ9GZP0 370 aaPredicted RBP22.22■■□□□ 1.15
LSM1-201ENST00000311351 STK32BQ9NY57 414 aa22.22■■□□□ 1.15
LSM1-201ENST00000311351 SPG7Q9UQ90 795 aa22.21■■□□□ 1.15
LSM1-201ENST00000311351 TUBGCP6Q96RT7 1819 aa22.21■■□□□ 1.15
LSM1-201ENST00000311351 SLC15A2Q16348 729 aa22.2■■□□□ 1.14
LSM1-201ENST00000311351 KCNQ4P56696 695 aa22.19■■□□□ 1.14
LSM1-201ENST00000311351 ZNF827Q17R98 1081 aa22.19■■□□□ 1.14
LSM1-201ENST00000311351 AEBP1Q8IUX7 1158 aa22.19■■□□□ 1.14
LSM1-201ENST00000311351 NPC1L1Q9UHC9 1359 aa22.18■■□□□ 1.14
LSM1-201ENST00000311351 MTHFSP49914 203 aa22.17■■□□□ 1.14
LSM1-201ENST00000311351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.17■■□□□ 1.14
LSM1-201ENST00000311351 QSER1Q2KHR3 1735 aa22.17■■□□□ 1.14
LSM1-201ENST00000311351 PLEKHG2Q9H7P9 1386 aa22.16■■□□□ 1.14
LSM1-201ENST00000311351 PHKG2P15735 406 aa22.16■■□□□ 1.14
LSM1-201ENST00000311351 IL13P35225 146 aa22.16■■□□□ 1.14
LSM1-201ENST00000311351 SLC27A3Q5K4L6 730 aa22.16■■□□□ 1.14
LSM1-201ENST00000311351 MPRIPQ6WCQ1 1025 aa22.16■■□□□ 1.14
LSM1-201ENST00000311351 C5P01031 1676 aa22.16■■□□□ 1.14
LSM1-201ENST00000311351 NKX1-1Q15270 411 aaPredicted RBP22.15■■□□□ 1.14
LSM1-201ENST00000311351 ZBTB7AO95365 584 aa22.14■■□□□ 1.13
LSM1-201ENST00000311351 SPON1Q9HCB6 807 aa22.14■■□□□ 1.13
LSM1-201ENST00000311351 TAF1LQ8IZX4 1826 aa22.14■■□□□ 1.13
LSM1-201ENST00000311351 KDRP35968 1356 aa22.13■■□□□ 1.13
LSM1-201ENST00000311351 PALLDQ8WX93 1383 aa22.13■■□□□ 1.13
LSM1-201ENST00000311351 SULT6B1Q6IMI4 303 aa22.13■■□□□ 1.13
LSM1-201ENST00000311351 IFNL2Q8IZJ0 200 aa22.13■■□□□ 1.13
LSM1-201ENST00000311351 CCNL1Q9UK58 526 aaPredicted RBP22.13■■□□□ 1.13
LSM1-201ENST00000311351 COL3A1P02461 1466 aaPredicted RBP22.13■■□□□ 1.13
LSM1-201ENST00000311351 AKT1S1Q96B36 256 aa22.12■■□□□ 1.13
LSM1-201ENST00000311351 PIGBQ92521 554 aa22.11■■□□□ 1.13
LSM1-201ENST00000311351 ZNF530Q6P9A1 599 aaPredicted RBP22.1■■□□□ 1.13
LSM1-201ENST00000311351 KDM6AO15550 1401 aaPredicted RBP22.09■■□□□ 1.13
LSM1-201ENST00000311351 PLEKHO1Q53GL0 409 aaPredicted RBP22.09■■□□□ 1.13
LSM1-201ENST00000311351 TMOD3Q9NYL9 352 aa22.08■■□□□ 1.13
LSM1-201ENST00000311351 ATF5Q9Y2D1 282 aaPredicted RBP22.08■■□□□ 1.13
LSM1-201ENST00000311351 HMOX1P09601 288 aa22.07■■□□□ 1.12
LSM1-201ENST00000311351 PPP1R1BQ9UD71 204 aaPredicted RBP22.07■■□□□ 1.12
LSM1-201ENST00000311351 PNPLA7Q6ZV29 1317 aa22.06■■□□□ 1.12
LSM1-201ENST00000311351 C4BP0C0L5 1744 aa22.06■■□□□ 1.12
LSM1-201ENST00000311351 DIAPH1O60610 1272 aaKnown RBP22.06■■□□□ 1.12
LSM1-201ENST00000311351 AMOTQ4VCS5 1084 aa22.06■■□□□ 1.12
LSM1-201ENST00000311351 VIRMAQ69YN4 1812 aaKnown RBP22.06■■□□□ 1.12
LSM1-201ENST00000311351 SCN11AQ9UI33 1791 aa22.05■■□□□ 1.12
LSM1-201ENST00000311351 PTGER2P43116 358 aa22.05■■□□□ 1.12
LSM1-201ENST00000311351 SMARCC1Q92922 1105 aaPredicted RBP22.05■■□□□ 1.12
LSM1-201ENST00000311351 MTFR1LQ9H019 292 aa22.04■■□□□ 1.12
LSM1-201ENST00000311351 TFCP2L1Q9NZI6 479 aa22.04■■□□□ 1.12
LSM1-201ENST00000311351 DCAF5Q96JK2 942 aa22.03■■□□□ 1.12
LSM1-201ENST00000311351 ASAP1Q9ULH1 1129 aa22.03■■□□□ 1.12
LSM1-201ENST00000311351 HSP90AB1P08238 724 aaKnown RBP22.02■■□□□ 1.12
LSM1-201ENST00000311351 C1orf141Q5JVX7 400 aa22.02■■□□□ 1.12
LSM1-201ENST00000311351 COL24A1Q17RW2 1714 aa22.02■■□□□ 1.12
LSM1-201ENST00000311351 UBR3Q6ZT12 1888 aa22.01■■□□□ 1.11
LSM1-201ENST00000311351 SGIP1Q9BQI5 828 aa22.01■■□□□ 1.11
LSM1-201ENST00000311351 ATG3Q9NT62 314 aa22■■□□□ 1.11
LSM1-201ENST00000311351 LOC102724428A0A0B4J2F2 783 aa21.99■■□□□ 1.11
LSM1-201ENST00000311351 ERVV-2B6SEH9 535 aa21.99■■□□□ 1.11
LSM1-201ENST00000311351 U2SURPO15042 1029 aaKnown RBP21.99■■□□□ 1.11
LSM1-201ENST00000311351 SIK1P57059 783 aa21.99■■□□□ 1.11
LSM1-201ENST00000311351 PPP2R1AP30153 589 aa21.98■■□□□ 1.11
LSM1-201ENST00000311351 CABP4P57796 275 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms