RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 ZHX3Q9H4I2 956 aa18.08■□□□□ 0.48
HCFC1-201ENST00000310441 SPECC1LQ69YQ0 1117 aa18.08■□□□□ 0.48
HCFC1-201ENST00000310441 ZNF428Q96B54 188 aa18.08■□□□□ 0.48
HCFC1-201ENST00000310441 TSG101Q99816 390 aa18.08■□□□□ 0.48
HCFC1-201ENST00000310441 GOLGA6L9A6NEM1 432 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 MROH2BQ7Z745 1585 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 NEMFO60524 1076 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 CASQ1P31415 396 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 C6orf163Q5TEZ5 329 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 SEC63Q9UGP8 760 aaKnown RBP18.07■□□□□ 0.48
HCFC1-201ENST00000310441 KIF20AO95235 890 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 ATP2B1P20020 1258 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 CGNQ9P2M7 1197 aaKnown RBP18.07■□□□□ 0.48
HCFC1-201ENST00000310441 HECW1Q76N89 1606 aa18.07■□□□□ 0.48
HCFC1-201ENST00000310441 PANK1Q8TE04 598 aa18.06■□□□□ 0.48
HCFC1-201ENST00000310441 IFFO1Q0D2I5 559 aa18.06■□□□□ 0.48
HCFC1-201ENST00000310441 CCDC175P0C221 793 aa18.06■□□□□ 0.48
HCFC1-201ENST00000310441 FILIP1Q7Z7B0 1213 aa18.06■□□□□ 0.48
HCFC1-201ENST00000310441 CCDC196A0A1B0GTZ2 297 aa18.06■□□□□ 0.48
HCFC1-201ENST00000310441 CTAGE5O15320 804 aa18.06■□□□□ 0.48
HCFC1-201ENST00000310441 CEBPZQ03701 1054 aaKnown RBP18.06■□□□□ 0.48
HCFC1-201ENST00000310441 BLOC1S2Q6QNY1 142 aa18.05■□□□□ 0.48
HCFC1-201ENST00000310441 MPHOSPH10O00566 681 aaKnown RBP18.05■□□□□ 0.48
HCFC1-201ENST00000310441 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.05■□□□□ 0.48
HCFC1-201ENST00000310441 V9GYY5 206 aaPredicted RBP18.05■□□□□ 0.48
HCFC1-201ENST00000310441 CAVIN2O95810 425 aa18.05■□□□□ 0.48
HCFC1-201ENST00000310441 PTPN14Q15678 1187 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 ERICH3Q5RHP9 1530 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 ALS2CR12Q96Q35 445 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 PYM1Q9BRP8 204 aaKnown RBP18.04■□□□□ 0.48
HCFC1-201ENST00000310441 CETN1Q12798 172 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 MTMR7Q9Y216 660 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 GSTTP1A0A1W2PQM5 241 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 USO1O60763 962 aaKnown RBP18.04■□□□□ 0.48
HCFC1-201ENST00000310441 ZNF76P36508 570 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 ATP2B2Q01814 1243 aa18.04■□□□□ 0.48
HCFC1-201ENST00000310441 MPHOSPH8Q99549 860 aa18.03■□□□□ 0.48
HCFC1-201ENST00000310441 BCL11BQ9C0K0 894 aaPredicted RBP18.03■□□□□ 0.48
HCFC1-201ENST00000310441 FERP16591 822 aa18.03■□□□□ 0.48
HCFC1-201ENST00000310441 CFAP100Q494V2 611 aa18.03■□□□□ 0.48
HCFC1-201ENST00000310441 FAM177A1Q8N128 213 aaPredicted RBP18.03■□□□□ 0.48
HCFC1-201ENST00000310441 EHBP1Q8NDI1 1231 aa18.03■□□□□ 0.48
HCFC1-201ENST00000310441 SSR1P43307 286 aaKnown RBP18.03■□□□□ 0.48
HCFC1-201ENST00000310441 U3KPZ7 1027 aaPredicted RBP18.03■□□□□ 0.48
HCFC1-201ENST00000310441 DDX23Q9BUQ8 820 aaKnown RBP18.03■□□□□ 0.48
HCFC1-201ENST00000310441 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
HCFC1-201ENST00000310441 NLRP2Q9NX02 1062 aa18.02■□□□□ 0.48
HCFC1-201ENST00000310441 HMOX1P09601 288 aa18.02■□□□□ 0.47
HCFC1-201ENST00000310441 GSDMDP57764 484 aa18.02■□□□□ 0.47
HCFC1-201ENST00000310441 ZSCAN30Q86W11 494 aa18.02■□□□□ 0.47
HCFC1-201ENST00000310441 SCAND2PQ9GZW5 306 aaPredicted RBP18.01■□□□□ 0.47
HCFC1-201ENST00000310441 ESPNB1AK53 854 aa18.01■□□□□ 0.47
HCFC1-201ENST00000310441 PAFAH1B1P43034 410 aa18.01■□□□□ 0.47
HCFC1-201ENST00000310441 TDRD9Q8NDG6 1382 aaKnown RBP18.01■□□□□ 0.47
HCFC1-201ENST00000310441 TDO2P48775 406 aa18■□□□□ 0.47
HCFC1-201ENST00000310441 ANO10Q9NW15 660 aa18■□□□□ 0.47
HCFC1-201ENST00000310441 FGD6Q6ZV73 1430 aa18■□□□□ 0.47
HCFC1-201ENST00000310441 PTPRGP23470 1445 aa18■□□□□ 0.47
HCFC1-201ENST00000310441 LRRC45Q96CN5 670 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 EHMT1Q9H9B1 1298 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 PLVAPQ9BX97 442 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 HMGB1P09429 215 aaKnown RBP17.99■□□□□ 0.47
HCFC1-201ENST00000310441 CCDC183Q5T5S1 534 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 PDRG1Q9NUG6 133 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 FSD2A1L4K1 749 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 CACNA2D4Q7Z3S7 1137 aa17.99■□□□□ 0.47
HCFC1-201ENST00000310441 TSNARE1Q96NA8 513 aa17.98■□□□□ 0.47
HCFC1-201ENST00000310441 RBM10P98175 930 aaKnown RBP17.98■□□□□ 0.47
HCFC1-201ENST00000310441 EHBP1L1Q8N3D4 1523 aa17.98■□□□□ 0.47
HCFC1-201ENST00000310441 WDHD1O75717 1129 aaPredicted RBP17.98■□□□□ 0.47
HCFC1-201ENST00000310441 IFI16Q16666 785 aaKnown RBP17.98■□□□□ 0.47
HCFC1-201ENST00000310441 WDR63Q8IWG1 891 aa17.98■□□□□ 0.47
HCFC1-201ENST00000310441 ERICH4A6NGS2 130 aa17.98■□□□□ 0.47
HCFC1-201ENST00000310441 MCM5P33992 734 aa17.98■□□□□ 0.47
HCFC1-201ENST00000310441 TWISTNBQ3B726 338 aaPredicted RBP17.98■□□□□ 0.47
HCFC1-201ENST00000310441 PABPN1LA6NDY0 278 aaKnown RBP17.97■□□□□ 0.47
HCFC1-201ENST00000310441 TTC21AQ8NDW8 1320 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 TMEM266Q2M3C6 531 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 FAM114A1Q8IWE2 563 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 CCDC113Q9H0I3 377 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 SH2B1Q9NRF2 756 aaPredicted RBP17.97■□□□□ 0.47
HCFC1-201ENST00000310441 TUBB4BP68371 445 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 NUP133Q8WUM0 1156 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 DAPK1P53355 1430 aa17.97■□□□□ 0.47
HCFC1-201ENST00000310441 LARP1Q6PKG0 1096 aaKnown RBP17.97■□□□□ 0.47
HCFC1-201ENST00000310441 CCDC172P0C7W6 258 aa17.96■□□□□ 0.47
HCFC1-201ENST00000310441 HFM1A2PYH4 1435 aa17.96■□□□□ 0.47
HCFC1-201ENST00000310441 IKBKGQ9Y6K9 419 aa17.96■□□□□ 0.47
HCFC1-201ENST00000310441 SSBP05455 408 aaKnown RBP eCLIP17.95■□□□□ 0.46
HCFC1-201ENST00000310441 ABTB2Q8N961 1025 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 HOMER2Q9NSB8 354 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 HMGB1P1B2RPK0 211 aaPredicted RBP17.95■□□□□ 0.46
HCFC1-201ENST00000310441 JPH4Q96JJ6 628 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 HDGFL1Q5TGJ6 251 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 ANKS4BQ8N8V4 417 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 GOPCQ9HD26 462 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 EFCAB5A4FU69 1503 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 CCDC178Q5BJE1 867 aa17.95■□□□□ 0.46
HCFC1-201ENST00000310441 YEATS4O95619 227 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 CTNNA2P26232 953 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms