RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 KIAA0586Q9BVV6 1533 aa20.42■□□□□ 0.86
SYNPO-201ENST00000307662 CAMK4Q16566 473 aa20.41■□□□□ 0.86
SYNPO-201ENST00000307662 SLC52A1Q9NWF4 448 aa20.41■□□□□ 0.86
SYNPO-201ENST00000307662 CWC27Q6UX04 472 aaKnown RBP20.41■□□□□ 0.86
SYNPO-201ENST00000307662 KRT32Q14532 448 aa20.41■□□□□ 0.86
SYNPO-201ENST00000307662 SFPQP23246 707 aaKnown RBP eCLIP20.41■□□□□ 0.86
SYNPO-201ENST00000307662 CCDC158Q5M9N0 1113 aa20.4■□□□□ 0.86
SYNPO-201ENST00000307662 TTC39AQ5SRH9 613 aa20.4■□□□□ 0.86
SYNPO-201ENST00000307662 FBXO3Q9UK99 471 aa20.4■□□□□ 0.86
SYNPO-201ENST00000307662 RPGRIP1LQ68CZ1 1315 aa20.4■□□□□ 0.86
SYNPO-201ENST00000307662 CENPHQ9H3R5 247 aa20.39■□□□□ 0.86
SYNPO-201ENST00000307662 MTMR7Q9Y216 660 aa20.39■□□□□ 0.86
SYNPO-201ENST00000307662 ZSCAN12O43309 604 aa20.39■□□□□ 0.85
SYNPO-201ENST00000307662 EPB41L2O43491 1005 aaKnown RBP20.39■□□□□ 0.85
SYNPO-201ENST00000307662 MAPK8IP2Q13387 824 aaPredicted RBP20.39■□□□□ 0.85
SYNPO-201ENST00000307662 ARHGAP29Q52LW3 1261 aa20.39■□□□□ 0.85
SYNPO-201ENST00000307662 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.39■□□□□ 0.85
SYNPO-201ENST00000307662 PLEKHH1Q9ULM0 1364 aa20.39■□□□□ 0.85
SYNPO-201ENST00000307662 CDK13Q14004 1512 aaKnown RBP20.39■□□□□ 0.85
SYNPO-201ENST00000307662 CASTP20810 708 aaKnown RBP20.39■□□□□ 0.85
SYNPO-201ENST00000307662 ANKRD30BQ9BXX2 1392 aa20.39■□□□□ 0.85
SYNPO-201ENST00000307662 MAP3K1Q13233 1512 aa20.39■□□□□ 0.85
SYNPO-201ENST00000307662 ZRSR2Q15696 482 aaKnown RBP20.39■□□□□ 0.85
SYNPO-201ENST00000307662 CFAP100Q494V2 611 aa20.39■□□□□ 0.85
SYNPO-201ENST00000307662 NUTM2GQ5VZR2 741 aa20.38■□□□□ 0.85
SYNPO-201ENST00000307662 CDK19Q9BWU1 502 aa20.38■□□□□ 0.85
SYNPO-201ENST00000307662 DYNC1I1O14576 645 aa20.38■□□□□ 0.85
SYNPO-201ENST00000307662 CDKL5O76039 1030 aa20.38■□□□□ 0.85
SYNPO-201ENST00000307662 NKTRP30414 1462 aaKnown RBP20.38■□□□□ 0.85
SYNPO-201ENST00000307662 SYCP1Q15431 976 aa20.37■□□□□ 0.85
SYNPO-201ENST00000307662 AACSQ86V21 672 aa20.37■□□□□ 0.85
SYNPO-201ENST00000307662 SYTL4Q96C24 671 aaPredicted RBP20.37■□□□□ 0.85
SYNPO-201ENST00000307662 PCF11O94913 1555 aaKnown RBP20.37■□□□□ 0.85
SYNPO-201ENST00000307662 SLC3A2P08195 630 aaKnown RBP20.37■□□□□ 0.85
SYNPO-201ENST00000307662 ZNF692Q9BU19 519 aaPredicted RBP20.37■□□□□ 0.85
SYNPO-201ENST00000307662 USP25Q9UHP3 1055 aa20.37■□□□□ 0.85
SYNPO-201ENST00000307662 TNNT1P13805 278 aa20.37■□□□□ 0.85
SYNPO-201ENST00000307662 SULT6B1Q6IMI4 303 aa20.37■□□□□ 0.85
SYNPO-201ENST00000307662 CCDC148Q8NFR7 591 aa20.37■□□□□ 0.85
SYNPO-201ENST00000307662 LRRFIP2Q9Y608 721 aaKnown RBP20.37■□□□□ 0.85
SYNPO-201ENST00000307662 CABP1Q9NZU7 370 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 ANO10Q9NW15 660 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 NLRP2Q9NX02 1062 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 CCDC69A6NI79 296 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 RARSP54136 660 aaKnown RBP20.36■□□□□ 0.85
SYNPO-201ENST00000307662 PLEKHO1Q53GL0 409 aaPredicted RBP20.36■□□□□ 0.85
SYNPO-201ENST00000307662 CRACR2AQ9BSW2 395 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 SCAND2PQ9GZW5 306 aaPredicted RBP20.36■□□□□ 0.85
SYNPO-201ENST00000307662 SIL1Q9H173 461 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 CLIP2Q9UDT6 1046 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 SRGAP3O43295 1099 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 PPP4R3BQ5MIZ7 849 aa20.36■□□□□ 0.85
SYNPO-201ENST00000307662 KRT18P05783 430 aaKnown RBP20.35■□□□□ 0.85
SYNPO-201ENST00000307662 RBM33Q96EV2 1170 aaKnown RBP20.35■□□□□ 0.85
SYNPO-201ENST00000307662 NOL7Q9UMY1 257 aaKnown RBP20.35■□□□□ 0.85
SYNPO-201ENST00000307662 TXNDC2Q86VQ3 553 aa20.35■□□□□ 0.85
SYNPO-201ENST00000307662 CCDC83Q8IWF9 413 aa20.35■□□□□ 0.85
SYNPO-201ENST00000307662 IL1RAPL2Q9NP60 686 aa20.35■□□□□ 0.85
SYNPO-201ENST00000307662 SHTN1A0MZ66 631 aa20.35■□□□□ 0.85
SYNPO-201ENST00000307662 NEFHP12036 1026 aa20.35■□□□□ 0.85
SYNPO-201ENST00000307662 ZMYND15Q9H091 742 aa20.35■□□□□ 0.85
SYNPO-201ENST00000307662 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.35■□□□□ 0.852e-9■■■■■ 223.6
SYNPO-201ENST00000307662 ATF3P18847 181 aa20.34■□□□□ 0.85
SYNPO-201ENST00000307662 CLCN1P35523 988 aa20.34■□□□□ 0.85
SYNPO-201ENST00000307662 FERMT3Q86UX7 667 aa20.34■□□□□ 0.85
SYNPO-201ENST00000307662 ABTB2Q8N961 1025 aa20.34■□□□□ 0.85
SYNPO-201ENST00000307662 TANGO6Q9C0B7 1094 aa20.34■□□□□ 0.85
SYNPO-201ENST00000307662 NEMFO60524 1076 aa20.34■□□□□ 0.85
SYNPO-201ENST00000307662 URI1O94763 535 aaPredicted RBP20.33■□□□□ 0.85
SYNPO-201ENST00000307662 CASQ1P31415 396 aa20.33■□□□□ 0.85
SYNPO-201ENST00000307662 LRPPRCP42704 1394 aaKnown RBP20.33■□□□□ 0.85
SYNPO-201ENST00000307662 GPRASP1Q5JY77 1395 aa20.33■□□□□ 0.85
SYNPO-201ENST00000307662 FCHSD2O94868 740 aa20.33■□□□□ 0.85
SYNPO-201ENST00000307662 KIAA1328Q86T90 577 aa20.33■□□□□ 0.84
SYNPO-201ENST00000307662 TMPOP42166 694 aaKnown RBP20.33■□□□□ 0.84
SYNPO-201ENST00000307662 ENOX2Q16206 610 aaKnown RBP20.33■□□□□ 0.84
SYNPO-201ENST00000307662 GIMAP7Q8NHV1 300 aa20.33■□□□□ 0.84
SYNPO-201ENST00000307662 PRIMPOLQ96LW4 560 aa20.33■□□□□ 0.84
SYNPO-201ENST00000307662 CTNNA3Q9UI47 895 aa20.32■□□□□ 0.84
SYNPO-201ENST00000307662 STK11IPQ8N1F8 1099 aa20.32■□□□□ 0.84
SYNPO-201ENST00000307662 NACAP1Q9BZK3 213 aa20.32■□□□□ 0.84
SYNPO-201ENST00000307662 IQGAP2Q13576 1575 aa20.32■□□□□ 0.84
SYNPO-201ENST00000307662 MX1P20591 662 aa20.32■□□□□ 0.84
SYNPO-201ENST00000307662 TAX1BP1Q86VP1 789 aa20.32■□□□□ 0.84
SYNPO-201ENST00000307662 C16orf45Q96MC5 204 aaPredicted RBP20.32■□□□□ 0.84
SYNPO-201ENST00000307662 ZHX1Q9UKY1 873 aaPredicted RBP20.32■□□□□ 0.84
SYNPO-201ENST00000307662 SEPT7Q16181 437 aaKnown RBP20.31■□□□□ 0.84
SYNPO-201ENST00000307662 MAP9Q49MG5 647 aa20.31■□□□□ 0.84
SYNPO-201ENST00000307662 DDX11Q96FC9 970 aa20.31■□□□□ 0.84
SYNPO-201ENST00000307662 SH2B1Q9NRF2 756 aaPredicted RBP20.31■□□□□ 0.84
SYNPO-201ENST00000307662 ATAD2Q6PL18 1390 aa20.31■□□□□ 0.84
SYNPO-201ENST00000307662 KLHL40Q2TBA0 621 aa20.31■□□□□ 0.84
SYNPO-201ENST00000307662 CCDC141Q6ZP82 1450 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 ALDH1L2Q3SY69 923 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 KIF5CO60282 957 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 ADCY5O95622 1261 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 ZSCAN25Q6NSZ9 544 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 BAG4O95429 457 aaKnown RBP20.3■□□□□ 0.84
SYNPO-201ENST00000307662 TBC1D32Q96NH3 1257 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 INCENPQ9NQS7 918 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms