RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 CCDC158Q5M9N0 1113 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 SIL1Q9H173 461 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 ZBTB3Q9H5J0 574 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 ARHGAP31Q2M1Z3 1444 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 SYNE3Q6ZMZ3 975 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 AEBP1Q8IUX7 1158 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 CWC22Q9HCG8 908 aaKnown RBP11.32□□□□□ -0.6
PTPRE-202ENST00000306042 MYD88Q99836 296 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 ASXL1Q8IXJ9 1541 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 TRDNQ13061 729 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 EYA1Q99502 592 aa11.32□□□□□ -0.6
PTPRE-202ENST00000306042 CCDC184Q52MB2 194 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 ATF7IPQ6VMQ6 1270 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 CEP126Q9P2H0 1117 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 GPTP24298 496 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 DCAF5Q96JK2 942 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 TRPC5Q9UL62 973 aaPredicted RBP11.31□□□□□ -0.6
PTPRE-202ENST00000306042 FAM83GA6ND36 823 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 QTRT2Q9H974 415 aaKnown RBP11.31□□□□□ -0.6
PTPRE-202ENST00000306042 GCC2Q8IWJ2 1684 aa11.31□□□□□ -0.6
PTPRE-202ENST00000306042 KDM5CP41229 1560 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 SLC39A6Q13433 755 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 TTC39AQ5SRH9 613 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 LNPKQ9C0E8 428 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 BAG6P46379 1132 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 RBM5P52756 815 aaKnown RBP eCLIP11.3□□□□□ -0.6
PTPRE-202ENST00000306042 PRDM15P57071 1507 aaPredicted RBP11.3□□□□□ -0.6
PTPRE-202ENST00000306042 BCAR3O75815 825 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 ZKSCAN1P17029 563 aaPredicted RBP11.3□□□□□ -0.6
PTPRE-202ENST00000306042 AKAP17AQ02040 695 aaKnown RBP11.3□□□□□ -0.6
PTPRE-202ENST00000306042 VPS53Q5VIR6 699 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 CERKQ8TCT0 537 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 DNAJC2Q99543 621 aaKnown RBP11.3□□□□□ -0.6
PTPRE-202ENST00000306042 CARD14Q9BXL6 1004 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 STK32BQ9NY57 414 aa11.3□□□□□ -0.6
PTPRE-202ENST00000306042 ZNF219Q9P2Y4 722 aaPredicted RBP11.3□□□□□ -0.6
PTPRE-202ENST00000306042 DHX16O60231 1041 aaKnown RBP11.29□□□□□ -0.6
PTPRE-202ENST00000306042 PPP1R42Q7Z4L9 355 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 NFATC2IPQ8NCF5 419 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 C1orf115Q9H7X2 142 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 RTCBQ9Y3I0 505 aaKnown RBP11.29□□□□□ -0.6
PTPRE-202ENST00000306042 SRGAP3O43295 1099 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 NCBP3Q53F19 620 aaKnown RBP11.29□□□□□ -0.6
PTPRE-202ENST00000306042 NOL8Q76FK4 1167 aaKnown RBP11.29□□□□□ -0.6
PTPRE-202ENST00000306042 NBPF6Q5VWK0 638 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 NBPF5PQ86XG9 351 aaPredicted RBP11.29□□□□□ -0.6
PTPRE-202ENST00000306042 C16orf71Q8IYS4 520 aaPredicted RBP11.29□□□□□ -0.6
PTPRE-202ENST00000306042 NBPF4Q96M43 638 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 PLXNC1O60486 1568 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 SBNO1A3KN83 1393 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 ST5P78524 1137 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 ANKIB1Q9P2G1 1089 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 ZFYVE9O95405 1425 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 ROBO2Q9HCK4 1378 aa11.29□□□□□ -0.6
PTPRE-202ENST00000306042 PDE3AQ14432 1141 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 SPRYD3Q8NCJ5 442 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 ZNF622Q969S3 477 aaKnown RBP eCLIP11.28□□□□□ -0.6
PTPRE-202ENST00000306042 FSD1Q9BTV5 496 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 KIF3AQ9Y496 699 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 HTATSF1O43719 755 aaKnown RBP11.28□□□□□ -0.6
PTPRE-202ENST00000306042 RXRBP28702 533 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
PTPRE-202ENST00000306042 DIP2BQ9P265 1576 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 MARCH6O60337 910 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 REC8O95072 547 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 NBR1Q14596 966 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 MTHFSDQ2M296 383 aaKnown RBP11.28□□□□□ -0.6
PTPRE-202ENST00000306042 RNF20Q5VTR2 975 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 DNAAF4Q8WXU2 420 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 CHMP4CQ96CF2 233 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 ANP32EQ9BTT0 268 aa11.28□□□□□ -0.6
PTPRE-202ENST00000306042 CLSTN1O94985 981 aa11.27□□□□□ -0.6
PTPRE-202ENST00000306042 SLFN5Q08AF3 891 aa11.27□□□□□ -0.6
PTPRE-202ENST00000306042 CPLX2Q6PUV4 134 aaKnown RBP11.27□□□□□ -0.6
PTPRE-202ENST00000306042 SETDB2Q96T68 719 aa11.27□□□□□ -0.6
PTPRE-202ENST00000306042 ERICH2A1L162 156 aa11.27□□□□□ -0.61
PTPRE-202ENST00000306042 CCNL1Q9UK58 526 aaPredicted RBP11.27□□□□□ -0.61
PTPRE-202ENST00000306042 PTPRTO14522 1441 aa11.27□□□□□ -0.61
PTPRE-202ENST00000306042 ST18O60284 1047 aa11.27□□□□□ -0.61
PTPRE-202ENST00000306042 APBA3O96018 575 aa11.27□□□□□ -0.61
PTPRE-202ENST00000306042 IFIT5Q13325 482 aaKnown RBP11.27□□□□□ -0.61
PTPRE-202ENST00000306042 METTL24Q5JXM2 366 aa11.27□□□□□ -0.61
PTPRE-202ENST00000306042 GLI2P10070 1586 aa11.27□□□□□ -0.61
PTPRE-202ENST00000306042 DDX46Q7L014 1031 aaKnown RBP11.26□□□□□ -0.61
PTPRE-202ENST00000306042 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.26□□□□□ -0.61
PTPRE-202ENST00000306042 ANO2Q9NQ90 1003 aa11.26□□□□□ -0.61
PTPRE-202ENST00000306042 FAM161AQ3B820 660 aa11.26□□□□□ -0.61
PTPRE-202ENST00000306042 FANCIQ9NVI1 1328 aa11.26□□□□□ -0.61
PTPRE-202ENST00000306042 CNTROBQ8N137 903 aa11.26□□□□□ -0.61
PTPRE-202ENST00000306042 TET3O43151 1660 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 BRINP3Q76B58 766 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 FLIIQ13045 1269 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 RALYLQ86SE5 291 aaKnown RBP11.25□□□□□ -0.61
PTPRE-202ENST00000306042 MAP3K4Q9Y6R4 1608 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 ALDH1L2Q3SY69 923 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 MBIPQ9NS73 344 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 CWC25Q9NXE8 425 aaPredicted RBP11.25□□□□□ -0.61
PTPRE-202ENST00000306042 TMOD2Q9NZR1 351 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 PARP3Q9Y6F1 533 aa11.25□□□□□ -0.61
PTPRE-202ENST00000306042 PTPRMP28827 1452 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms