RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 FAM177A1Q8N128 213 aaPredicted RBP15.14■□□□□ 0.01
COL3A1-201ENST00000304636 SH2B1Q9NRF2 756 aaPredicted RBP15.14■□□□□ 0.01
COL3A1-201ENST00000304636 MAPKBP1O60336 1514 aa15.14■□□□□ 0.01
COL3A1-201ENST00000304636 KIF18AQ8NI77 898 aa15.14■□□□□ 0.01
COL3A1-201ENST00000304636 CAMK4Q16566 473 aa15.14■□□□□ 0.01
COL3A1-201ENST00000304636 XRCC6P12956 609 aaKnown RBP eCLIP15.14■□□□□ 0.01
COL3A1-201ENST00000304636 TRIM27P14373 513 aa15.14■□□□□ 0.01
COL3A1-201ENST00000304636 PRDM10Q9NQV6 1147 aa15.14■□□□□ 0.01
COL3A1-201ENST00000304636 TOPBP1Q92547 1522 aa15.14■□□□□ 0.01
COL3A1-201ENST00000304636 ERICH4A6NGS2 130 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 UVSSAQ2YD98 709 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 RAB11FIP3O75154 756 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 KIAA0754O94854 1291 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 NUTM2GQ5VZR2 741 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 USP25Q9UHP3 1055 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 EXOC6BQ9Y2D4 811 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 TRIM22Q8IYM9 498 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.13■□□□□ 0.01
COL3A1-201ENST00000304636 PRIMPOLQ96LW4 560 aa15.13■□□□□ 0.01
COL3A1-201ENST00000304636 TBC1D9Q6ZT07 1266 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 CCDC83Q8IWF9 413 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 CDKL5O76039 1030 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 TTC39AQ5SRH9 613 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 SFPQP23246 707 aaKnown RBP eCLIP15.12■□□□□ 0.01
COL3A1-201ENST00000304636 TCEAL9Q9UHQ7 104 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 RAD21O60216 631 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 KIF1BPQ96EK5 621 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 ANO10Q9NW15 660 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 CAMSAP2Q08AD1 1489 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 NEMFO60524 1076 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 TXLNBQ8N3L3 684 aa15.12■□□□□ 0.01
COL3A1-201ENST00000304636 SMARCA5O60264 1052 aaPredicted RBP15.11■□□□□ 0.01
COL3A1-201ENST00000304636 C8orf34Q49A92 452 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 SIL1Q9H173 461 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 NLRP2Q9NX02 1062 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 GOLGA6L10A6NI86 522 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 CT47A1Q5JQC4 288 aaPredicted RBP15.11■□□□□ 0.01
COL3A1-201ENST00000304636 IQCEQ6IPM2 695 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 TRIM34Q9BYJ4 488 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 RTEL1-TNFRSF6BF6WH68 1400 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 GLRX3O76003 335 aaKnown RBP15.11■□□□□ 0.01
COL3A1-201ENST00000304636 USP8P40818 1118 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 ZSCAN23Q3MJ62 389 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 NUTM1Q86Y26 1132 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 ABTB2Q8N961 1025 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 SLC52A1Q9NWF4 448 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 CLIP2Q9UDT6 1046 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 CTNNA3Q9UI47 895 aa15.11■□□□□ 0.01
COL3A1-201ENST00000304636 ZSCAN12O43309 604 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 STIM1Q13586 685 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 LUC7LQ9NQ29 371 aaKnown RBP15.1■□□□□ 0.01
COL3A1-201ENST00000304636 HMGXB3Q12766 1538 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 TNNT1P13805 278 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 HDAC1Q13547 482 aaPredicted RBP15.1■□□□□ 0.01
COL3A1-201ENST00000304636 LIMCH1Q9UPQ0 1083 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 FERMT3Q86UX7 667 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 GBP3Q9H0R5 595 aa15.1■□□□□ 0.01
COL3A1-201ENST00000304636 CCDC181Q5TID7 509 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 ADCY5O95622 1261 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 FYB1O15117 783 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 CTAGE5O15320 804 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 CFAP100Q494V2 611 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 LRSAM1Q6UWE0 723 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 CALCOCO1Q9P1Z2 691 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 CCDC102AQ96A19 550 aa15.09■□□□□ 0.01
COL3A1-201ENST00000304636 PRPF40BQ6NWY9 871 aaKnown RBP15.08■□□□□ 0.01
COL3A1-201ENST00000304636 ZMYND15Q9H091 742 aa15.08■□□□□ 0.01
COL3A1-201ENST00000304636 SKIDA1Q1XH10 827 aa15.08■□□□□ 0
COL3A1-201ENST00000304636 PPP4R3BQ5MIZ7 849 aa15.08■□□□□ 0
COL3A1-201ENST00000304636 DDX19AQ9NUU7 478 aaKnown RBP15.08■□□□□ 0
COL3A1-201ENST00000304636 ERLIN2O94905 339 aa15.08■□□□□ 0
COL3A1-201ENST00000304636 HSP90AB2PQ58FF8 381 aa15.08■□□□□ 0
COL3A1-201ENST00000304636 CCDC69A6NI79 296 aa15.08■□□□□ 0
COL3A1-201ENST00000304636 ZSCAN25Q6NSZ9 544 aa15.08■□□□□ 0
COL3A1-201ENST00000304636 CDK5RAP3Q96JB5 506 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 TXNDC2Q86VQ3 553 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 SNX21Q969T3 373 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 EPB41L2O43491 1005 aaKnown RBP15.07■□□□□ 0
COL3A1-201ENST00000304636 SLC3A2P08195 630 aaKnown RBP15.07■□□□□ 0
COL3A1-201ENST00000304636 RRS1Q15050 365 aaKnown RBP15.07■□□□□ 0
COL3A1-201ENST00000304636 THUMPD2Q9BTF0 503 aaKnown RBP15.07■□□□□ 0
COL3A1-201ENST00000304636 DEF6Q9H4E7 631 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 ARHGAP29Q52LW3 1261 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 DDX11Q96FC9 970 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 DNMBPQ6XZF7 1577 aa15.07■□□□□ 0
COL3A1-201ENST00000304636 NOL7Q9UMY1 257 aaKnown RBP15.06■□□□□ 0
COL3A1-201ENST00000304636 NUCB1Q02818 461 aa15.06■□□□□ 0
COL3A1-201ENST00000304636 CCDC43Q96MW1 224 aaKnown RBP15.06■□□□□ 0
COL3A1-201ENST00000304636 NACAP1Q9BZK3 213 aa15.06■□□□□ 0
COL3A1-201ENST00000304636 C16orf45Q96MC5 204 aaPredicted RBP15.06■□□□□ 0
COL3A1-201ENST00000304636 RBM27Q9P2N5 1060 aaKnown RBP15.06■□□□□ 0
COL3A1-201ENST00000304636 IL16Q14005 1332 aa15.05■□□□□ 0
COL3A1-201ENST00000304636 GSDMDP57764 484 aa15.05■□□□□ 0
COL3A1-201ENST00000304636 UBE2HP62256 183 aa15.05■□□□□ 0
COL3A1-201ENST00000304636 ODF2Q5BJF6 829 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 TTC22Q5TAA0 569 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 CCAR1Q8IX12 1150 aaKnown RBP15.05■□□□□ -0
COL3A1-201ENST00000304636 WASF1Q92558 559 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 SYTL4Q96C24 671 aaPredicted RBP15.05■□□□□ -0
COL3A1-201ENST00000304636 SCAF11Q99590 1463 aaKnown RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms