RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 KNSTRNQ9Y448 316 aa36.26■■■■□ 3.4
CDKN2A-201ENST00000304494 ACSBG1Q96GR2 724 aa36.25■■■■□ 3.39
CDKN2A-201ENST00000304494 KCNQ2O43526 872 aa36.24■■■■□ 3.39
CDKN2A-201ENST00000304494 TNNT2P45379 298 aaPredicted RBP36.24■■■■□ 3.39
CDKN2A-201ENST00000304494 MAP2P11137 1827 aaKnown RBP36.24■■■■□ 3.39
CDKN2A-201ENST00000304494 TATP17735 454 aaPredicted RBP36.22■■■■□ 3.39
CDKN2A-201ENST00000304494 MORC1Q86VD1 984 aa36.18■■■■□ 3.38
CDKN2A-201ENST00000304494 SHANK3Q9BYB0 1731 aa36.16■■■■□ 3.38
CDKN2A-201ENST00000304494 LRP5O75197 1615 aa36.16■■■■□ 3.38
CDKN2A-201ENST00000304494 NCAPD2Q15021 1401 aa36.15■■■■□ 3.38
CDKN2A-201ENST00000304494 TXNRD1Q16881 649 aa36.14■■■■□ 3.38
CDKN2A-201ENST00000304494 PROM2Q8N271 834 aa36.14■■■■□ 3.38
CDKN2A-201ENST00000304494 PCDH11XQ9BZA7 1347 aa36.11■■■■□ 3.37
CDKN2A-201ENST00000304494 PCDH11YQ9BZA8 1340 aa36.11■■■■□ 3.37
CDKN2A-201ENST00000304494 BTAF1O14981 1849 aa36.11■■■■□ 3.37
CDKN2A-201ENST00000304494 AMER1Q5JTC6 1135 aaPredicted RBP36.1■■■■□ 3.37
CDKN2A-201ENST00000304494 EYA1Q99502 592 aa36.1■■■■□ 3.37
CDKN2A-201ENST00000304494 EIF4A2Q14240 407 aaKnown RBP36.09■■■■□ 3.37
CDKN2A-201ENST00000304494 SYTL4Q96C24 671 aaPredicted RBP36.07■■■■□ 3.36
CDKN2A-201ENST00000304494 DOT1LQ8TEK3 1739 aa36.07■■■■□ 3.36
CDKN2A-201ENST00000304494 PRIM1P49642 420 aaKnown RBP36.06■■■■□ 3.36
CDKN2A-201ENST00000304494 PER1O15534 1290 aaPredicted RBP36.04■■■■□ 3.36
CDKN2A-201ENST00000304494 ANO8Q9HCE9 1232 aaPredicted RBP36.04■■■■□ 3.36
CDKN2A-201ENST00000304494 KAT6BQ8WYB5 2073 aa36.03■■■■□ 3.36
CDKN2A-201ENST00000304494 SPG7Q9UQ90 795 aa36.03■■■■□ 3.36
CDKN2A-201ENST00000304494 PKD1L3Q7Z443 1732 aa36.03■■■■□ 3.36
CDKN2A-201ENST00000304494 STK32BQ9NY57 414 aa36.01■■■■□ 3.36
CDKN2A-201ENST00000304494 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP36■■■■□ 3.35
CDKN2A-201ENST00000304494 IGSF1Q8N6C5 1336 aa35.99■■■■□ 3.35
CDKN2A-201ENST00000304494 CYP27B1O15528 508 aa35.98■■■■□ 3.35
CDKN2A-201ENST00000304494 PLEKHG2Q9H7P9 1386 aa35.98■■■■□ 3.35
CDKN2A-201ENST00000304494 SLC27A3Q5K4L6 730 aa35.97■■■■□ 3.35
CDKN2A-201ENST00000304494 SLC15A2Q16348 729 aa35.96■■■■□ 3.35
CDKN2A-201ENST00000304494 NPC1L1Q9UHC9 1359 aa35.94■■■■□ 3.34
CDKN2A-201ENST00000304494 CC2D1BQ5T0F9 858 aaKnown RBP35.94■■■■□ 3.34
CDKN2A-201ENST00000304494 PAPPAQ13219 1627 aa35.92■■■■□ 3.34
CDKN2A-201ENST00000304494 NKX1-1Q15270 411 aaPredicted RBP35.91■■■■□ 3.34
CDKN2A-201ENST00000304494 LRRC4BQ9NT99 713 aa35.91■■■■□ 3.34
CDKN2A-201ENST00000304494 SPON1Q9HCB6 807 aa35.9■■■■□ 3.34
CDKN2A-201ENST00000304494 IFNL2Q8IZJ0 200 aa35.88■■■■□ 3.33
CDKN2A-201ENST00000304494 CASZ1Q86V15 1759 aa35.87■■■■□ 3.33
CDKN2A-201ENST00000304494 MTHFSP49914 203 aa35.87■■■■□ 3.33
CDKN2A-201ENST00000304494 MPRIPQ6WCQ1 1025 aa35.86■■■■□ 3.33
CDKN2A-201ENST00000304494 LY75O60449 1722 aa35.86■■■■□ 3.33
CDKN2A-201ENST00000304494 PHKG2P15735 406 aa35.85■■■■□ 3.33
CDKN2A-201ENST00000304494 IL13P35225 146 aa35.85■■■■□ 3.33
CDKN2A-201ENST00000304494 TOGARAM1Q9Y4F4 1720 aa35.83■■■■□ 3.33
CDKN2A-201ENST00000304494 CCNL1Q9UK58 526 aaPredicted RBP35.83■■■■□ 3.33
CDKN2A-201ENST00000304494 PLEKHO1Q53GL0 409 aaPredicted RBP35.82■■■■□ 3.32
CDKN2A-201ENST00000304494 PDGFDQ9GZP0 370 aaPredicted RBP35.82■■■■□ 3.32
CDKN2A-201ENST00000304494 AMOTQ4VCS5 1084 aa35.81■■■■□ 3.32
CDKN2A-201ENST00000304494 ZNF827Q17R98 1081 aa35.8■■■■□ 3.32
CDKN2A-201ENST00000304494 SULT6B1Q6IMI4 303 aa35.8■■■■□ 3.32
CDKN2A-201ENST00000304494 AKT1S1Q96B36 256 aa35.8■■■■□ 3.32
CDKN2A-201ENST00000304494 HMGB2P26583 209 aaKnown RBP35.79■■■■□ 3.32
CDKN2A-201ENST00000304494 AEBP1Q8IUX7 1158 aa35.79■■■■□ 3.32
CDKN2A-201ENST00000304494 ITGB4P16144 1822 aa35.78■■■■□ 3.32
CDKN2A-201ENST00000304494 KDRP35968 1356 aa35.78■■■■□ 3.32
CDKN2A-201ENST00000304494 CNGB1Q14028 1251 aaPredicted RBP35.78■■■■□ 3.32
CDKN2A-201ENST00000304494 SMARCC1Q92922 1105 aaPredicted RBP35.78■■■■□ 3.32
CDKN2A-201ENST00000304494 PALLDQ8WX93 1383 aa35.77■■■■□ 3.32
CDKN2A-201ENST00000304494 HSP90AB1P08238 724 aaKnown RBP35.77■■■■□ 3.32
CDKN2A-201ENST00000304494 KCNQ4P56696 695 aa35.77■■■■□ 3.32
CDKN2A-201ENST00000304494 PPP1R1BQ9UD71 204 aaPredicted RBP35.77■■■■□ 3.32
CDKN2A-201ENST00000304494 ZBTB7AO95365 584 aa35.76■■■■□ 3.32
CDKN2A-201ENST00000304494 PIGBQ92521 554 aa35.76■■■■□ 3.32
CDKN2A-201ENST00000304494 TMOD3Q9NYL9 352 aa35.76■■■■□ 3.32
CDKN2A-201ENST00000304494 DIAPH1O60610 1272 aaKnown RBP35.74■■■■□ 3.31
CDKN2A-201ENST00000304494 MTFR1LQ9H019 292 aa35.74■■■■□ 3.31
CDKN2A-201ENST00000304494 ZNF530Q6P9A1 599 aaPredicted RBP35.73■■■■□ 3.31
CDKN2A-201ENST00000304494 TFCP2L1Q9NZI6 479 aa35.73■■■■□ 3.31
CDKN2A-201ENST00000304494 DCAF5Q96JK2 942 aa35.72■■■■□ 3.31
CDKN2A-201ENST00000304494 QSER1Q2KHR3 1735 aa35.7■■■■□ 3.31
CDKN2A-201ENST00000304494 C1orf141Q5JVX7 400 aa35.7■■■■□ 3.31
CDKN2A-201ENST00000304494 ERVV-2B6SEH9 535 aa35.69■■■■□ 3.3
CDKN2A-201ENST00000304494 ATF5Q9Y2D1 282 aaPredicted RBP35.69■■■■□ 3.3
CDKN2A-201ENST00000304494 PNPLA7Q6ZV29 1317 aa35.66■■■■□ 3.3
CDKN2A-201ENST00000304494 C5P01031 1676 aa35.65■■■■□ 3.3
CDKN2A-201ENST00000304494 PTGER2P43116 358 aa35.65■■■■□ 3.3
CDKN2A-201ENST00000304494 SLC16A10Q8TF71 515 aa35.65■■■■□ 3.3
CDKN2A-201ENST00000304494 COL3A1P02461 1466 aaPredicted RBP35.63■■■■□ 3.29
CDKN2A-201ENST00000304494 HMOX1P09601 288 aa35.63■■■■□ 3.29
CDKN2A-201ENST00000304494 ASAP1Q9ULH1 1129 aa35.62■■■■□ 3.29
CDKN2A-201ENST00000304494 KDM6AO15550 1401 aaPredicted RBP35.62■■■■□ 3.29
CDKN2A-201ENST00000304494 CFAP53Q96M91 514 aa35.61■■■■□ 3.29
CDKN2A-201ENST00000304494 TUBGCP6Q96RT7 1819 aa35.6■■■■□ 3.29
CDKN2A-201ENST00000304494 LOC102724428A0A0B4J2F2 783 aa35.6■■■■□ 3.29
CDKN2A-201ENST00000304494 SIK1P57059 783 aa35.6■■■■□ 3.29
CDKN2A-201ENST00000304494 CABP4P57796 275 aa35.59■■■■□ 3.29
CDKN2A-201ENST00000304494 AKAP4Q5JQC9 854 aa35.59■■■■□ 3.29
CDKN2A-201ENST00000304494 ATG3Q9NT62 314 aa35.59■■■■□ 3.29
CDKN2A-201ENST00000304494 TAF1LQ8IZX4 1826 aa35.58■■■■□ 3.29
CDKN2A-201ENST00000304494 SGIP1Q9BQI5 828 aa35.58■■■■□ 3.29
CDKN2A-201ENST00000304494 U2SURPO15042 1029 aaKnown RBP35.57■■■■□ 3.28
CDKN2A-201ENST00000304494 AK7Q96M32 723 aa35.55■■■■□ 3.28
CDKN2A-201ENST00000304494 C4BP0C0L5 1744 aa35.54■■■■□ 3.28
CDKN2A-201ENST00000304494 PPP2R1AP30153 589 aa35.54■■■■□ 3.28
CDKN2A-201ENST00000304494 FLAD1Q8NFF5 587 aa35.54■■■■□ 3.28
CDKN2A-201ENST00000304494 MSH5O43196 834 aa35.53■■■■□ 3.28
CDKN2A-201ENST00000304494 ATP6V1AP38606 617 aa35.52■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms