RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 XBP1P17861 261 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 RPAINQ86UA6 219 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 SLC52A1Q9NWF4 448 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 BABAM1Q9NWV8 329 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 ST20-MTHFSA0A0A6YYL1 179 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 RAD21O60216 631 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 KINO60870 393 aaKnown RBP6.17□□□□□ -1.42
SCN1A-201ENST00000303395 BMP15O95972 392 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 SRPK2P78362 688 aaKnown RBP6.17□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC183Q5T5S1 534 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 RAB11FIP3O75154 756 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 UTP14AQ9BVJ6 771 aaKnown RBP6.17□□□□□ -1.42
SCN1A-201ENST00000303395 PLXNC1O60486 1568 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 H3BQV1 296 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 CLUL1Q15846 466 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 IFFO2Q5TF58 517 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 SMC3Q9UQE7 1217 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 MYO10Q9HD67 2058 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 KIAA0754O94854 1291 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 ZWINTO95229 277 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 OLFM4Q6UX06 510 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 SYNE3Q6ZMZ3 975 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 RGS22Q8NE09 1264 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC94Q9BW85 323 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-201ENST00000303395 LAMC1P11047 1609 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 CLASP1Q7Z460 1538 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 ERLIN2O94905 339 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC50Q8IVM0 306 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 ARHGEF5Q12774 1597 aa6.17□□□□□ -1.42
SCN1A-201ENST00000303395 WASF1Q92558 559 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 STAMBPO95630 424 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 KRT222Q8N1A0 295 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 TIGD1Q96MW7 591 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 TBC1D32Q96NH3 1257 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 RTEL1-TNFRSF6BF6WH68 1400 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 SAFBQ15424 915 aaKnown RBP eCLIP6.16□□□□□ -1.42
SCN1A-201ENST00000303395 DNAI2Q9GZS0 605 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 PRPF40AO75400 957 aaKnown RBP6.16□□□□□ -1.42
SCN1A-201ENST00000303395 FCHSD2O94868 740 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 FILIP1LQ4L180 1135 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 EXOC6Q8TAG9 804 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 HMG20BQ9P0W2 317 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 GOLIM4O00461 696 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 HOOK3Q86VS8 718 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 RNF214Q8ND24 703 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 ANKRD18BA2A2Z9 1011 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 RPGRIP1Q96KN7 1286 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 CRBNQ96SW2 442 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 ZKSCAN5Q9Y2L8 839 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 ANKRD62A6NC57 917 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 PTPRCP08575 1304 aa6.16□□□□□ -1.42
SCN1A-201ENST00000303395 TRHP20396 242 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 ENOX2Q16206 610 aaKnown RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 CTCFLQ8NI51 663 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 USH1CQ9Y6N9 552 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 SAMD9Q5K651 1589 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 PPIP5K1Q6PFW1 1433 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 RASSF4Q9H2L5 321 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 TRAPPC8Q9Y2L5 1435 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 COL17A1Q9UMD9 1497 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 CSB-PGBD3P0DP91 1061 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC38Q502W7 563 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 PPP1R2P41236 205 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 GAS2L2Q8NHY3 880 aa6.15□□□□□ -1.42
SCN1A-201ENST00000303395 MKRN1Q9UHC7 482 aaKnown RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 POLR1AO95602 1720 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 URB2Q14146 1524 aaKnown RBP6.15□□□□□ -1.42
SCN1A-201ENST00000303395 TRIM29Q14134 588 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 ATF7IPQ6VMQ6 1270 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 CNTROBQ8N137 903 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 GOLGA6L10A6NI86 522 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 SETSIPP0DME0 302 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 SPAG1Q07617 926 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 SLFN5Q08AF3 891 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 TMCO3Q6UWJ1 677 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 BRMS1Q9HCU9 246 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 NEBLO76041 1014 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 SSR1P43307 286 aaKnown RBP6.15□□□□□ -1.43
SCN1A-201ENST00000303395 SLMAPQ14BN4 828 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 KIAA1328Q86T90 577 aa6.15□□□□□ -1.43
SCN1A-201ENST00000303395 DIAPH1O60610 1272 aaKnown RBP6.14□□□□□ -1.43
SCN1A-201ENST00000303395 ZNF692Q9BU19 519 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-201ENST00000303395 PANK3Q9H999 370 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 KANK3Q6NY19 840 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 IMMTQ16891 758 aaKnown RBP6.14□□□□□ -1.43
SCN1A-201ENST00000303395 CEP128Q6ZU80 1094 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 ARFGAP2Q8N6H7 521 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 NOL7Q9UMY1 257 aaKnown RBP6.14□□□□□ -1.43
SCN1A-201ENST00000303395 SPDYE4A6NLX3 237 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 CCDC146Q8IYE0 955 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 WDR70Q9NW82 654 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 CTNNA3Q9UI47 895 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 RAD54L2Q9Y4B4 1467 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 RTL1A6NKG5 1358 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 NDC80O14777 642 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 ZNF445P59923 1031 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 OGFRQ9NZT2 677 aa6.14□□□□□ -1.43
SCN1A-201ENST00000303395 CBX1P83916 185 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 ZSCAN16Q9H4T2 348 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-201ENST00000303395 HOMER2Q9NSB8 354 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms