RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 NEFHP12036 1026 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 ZNF692Q9BU19 519 aaPredicted RBP9.27□□□□□ -0.93
SCN9A-201ENST00000303354 UBAC1Q9BSL1 405 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 PICALMQ13492 652 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 CAVIN4Q5BKX8 364 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 CCDC24Q8N4L8 307 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 MYOM3Q5VTT5 1437 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 CAVIN1Q6NZI2 390 aaKnown RBP9.27□□□□□ -0.93
SCN9A-201ENST00000303354 PPP6R1Q9UPN7 881 aa9.27□□□□□ -0.93
SCN9A-201ENST00000303354 NBPF8Q3BBV2 869 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 PRKG1Q13976 671 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 JAKMIP1Q96N16 626 aaKnown RBP9.26□□□□□ -0.93
SCN9A-201ENST00000303354 MMRN2Q9H8L6 949 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 GJA3Q9Y6H8 435 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 CCDC184Q52MB2 194 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 SNAPC4Q5SXM2 1469 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 TNNT1P13805 278 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 SLC39A6Q13433 755 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 RUFY1Q96T51 708 aa9.26□□□□□ -0.93
SCN9A-201ENST00000303354 NFKBIBQ15653 356 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 TAF7Q15545 349 aaPredicted RBP9.25□□□□□ -0.93
SCN9A-201ENST00000303354 TXLNAP40222 546 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 DUSP27Q5VZP5 1158 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 ZNF771Q7L3S4 317 aaPredicted RBP9.25□□□□□ -0.93
SCN9A-201ENST00000303354 CCDC7Q96M83 1385 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.25□□□□□ -0.93
SCN9A-201ENST00000303354 FAM13BQ9NYF5 915 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 PHF8Q9UPP1 1060 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 FAM83GA6ND36 823 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 ME1P48163 572 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 ZNF652Q9Y2D9 606 aa9.25□□□□□ -0.93
SCN9A-201ENST00000303354 ZNF444Q8N0Y2 327 aaPredicted RBP9.24□□□□□ -0.93
SCN9A-201ENST00000303354 ATP6V1AP38606 617 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 TSHZ3Q63HK5 1081 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 DNA2P51530 1060 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 SERPINC1P01008 464 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 IFIT1P09914 478 aaKnown RBP9.24□□□□□ -0.93
SCN9A-201ENST00000303354 DDX17Q92841 729 aaKnown RBP9.24□□□□□ -0.93
SCN9A-201ENST00000303354 FEZ1Q99689 392 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 CFTRP13569 1480 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 DEF6Q9H4E7 631 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 PLS1Q14651 629 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 TRIM5Q9C035 493 aa9.24□□□□□ -0.93
SCN9A-201ENST00000303354 ERC1Q8IUD2 1116 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 CAMK4Q16566 473 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 VEZTQ9HBM0 779 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 TFCP2L1Q9NZI6 479 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 NOM1Q5C9Z4 860 aaKnown RBP9.23□□□□□ -0.93
SCN9A-201ENST00000303354 MNS1Q8NEH6 495 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 HAND2P61296 217 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 ZNF526Q8TF50 670 aaPredicted RBP9.23□□□□□ -0.93
SCN9A-201ENST00000303354 ISM2Q6H9L7 571 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 CYP46A1Q9Y6A2 500 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 HSP90AB3PQ58FF7 597 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 CHMP5Q9NZZ3 219 aa9.23□□□□□ -0.93
SCN9A-201ENST00000303354 CCT2P78371 535 aaKnown RBP9.22□□□□□ -0.93
SCN9A-201ENST00000303354 TRIM22Q8IYM9 498 aa9.22□□□□□ -0.93
SCN9A-201ENST00000303354 LRRC59Q96AG4 307 aaKnown RBP9.22□□□□□ -0.93
SCN9A-201ENST00000303354 BIN2Q9UBW5 565 aaPredicted RBP9.22□□□□□ -0.93
SCN9A-201ENST00000303354 NCOA2Q15596 1464 aa9.22□□□□□ -0.93
SCN9A-201ENST00000303354 SYNJ2O15056 1496 aa9.22□□□□□ -0.93
SCN9A-201ENST00000303354 SMARCA4P51532 1647 aa9.22□□□□□ -0.93
SCN9A-201ENST00000303354 FAM193AP78312 1265 aa9.22□□□□□ -0.93
SCN9A-201ENST00000303354 PDRG1Q9NUG6 133 aa9.22□□□□□ -0.93
SCN9A-201ENST00000303354 FERMT3Q86UX7 667 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 MAP3K2Q9Y2U5 619 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 FGD6Q6ZV73 1430 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 ZBED9Q6R2W3 1325 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 CENPHQ9H3R5 247 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 TERF1P54274 439 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 ANKRD24Q8TF21 1146 aa9.21□□□□□ -0.93
SCN9A-201ENST00000303354 A0A087WZG4 1122 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 KINO60870 393 aaKnown RBP9.21□□□□□ -0.94
SCN9A-201ENST00000303354 SAMM50Q9Y512 469 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 SPTY2D1Q68D10 685 aaPredicted RBP9.21□□□□□ -0.94
SCN9A-201ENST00000303354 TMEM57Q8N5G2 664 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 ZBTB9Q96C00 473 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 ZSCAN25Q6NSZ9 544 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 CCDC83Q8IWF9 413 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 PNISRQ8TF01 805 aaKnown RBP9.21□□□□□ -0.94
SCN9A-201ENST00000303354 ZRANB1Q9UGI0 708 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 IFIT5Q13325 482 aaKnown RBP9.21□□□□□ -0.94
SCN9A-201ENST00000303354 FILIP1LQ4L180 1135 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 DDX46Q7L014 1031 aaKnown RBP9.21□□□□□ -0.94
SCN9A-201ENST00000303354 PANK2Q9BZ23 570 aa9.21□□□□□ -0.94
SCN9A-201ENST00000303354 GSE1Q14687 1217 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 KLHL10Q6JEL2 608 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 PLCD4Q9BRC7 762 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 FYCO1Q9BQS8 1478 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 LARP1BQ659C4 914 aaKnown RBP9.2□□□□□ -0.94
SCN9A-201ENST00000303354 WDHD1O75717 1129 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-201ENST00000303354 CCT4P50991 539 aaKnown RBP9.2□□□□□ -0.94
SCN9A-201ENST00000303354 NAIPQ13075 1403 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 CASTP20810 708 aaKnown RBP9.2□□□□□ -0.94
SCN9A-201ENST00000303354 POGZQ7Z3K3 1410 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 SEC63Q9UGP8 760 aaKnown RBP9.2□□□□□ -0.94
SCN9A-201ENST00000303354 KCNH5Q8NCM2 988 aa9.2□□□□□ -0.94
SCN9A-201ENST00000303354 PRPF40BQ6NWY9 871 aaKnown RBP9.2□□□□□ -0.94
SCN9A-201ENST00000303354 NSD3Q9BZ95 1437 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 ST5P78524 1137 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 206.8 ms