RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 VAMP4O75379 141 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 KIF20AO95235 890 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 MBD3O95983 291 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 GTF2F1P35269 517 aaKnown RBP eCLIP16.38■□□□□ 0.21
SKA3-201ENST00000298260 PALD1Q9ULE6 856 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 ABCA6Q8N139 1617 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 MAP3K4Q9Y6R4 1608 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 HMOX1P09601 288 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 FKBP5Q13451 457 aaPredicted RBP16.38■□□□□ 0.21
SKA3-201ENST00000298260 KRT24Q2M2I5 525 aa16.38■□□□□ 0.21
SKA3-201ENST00000298260 UPF3BQ9BZI7 483 aaKnown RBP16.38■□□□□ 0.21
SKA3-201ENST00000298260 LETM1O95202 739 aaPredicted RBP16.37■□□□□ 0.21
SKA3-201ENST00000298260 KCNF1Q9H3M0 494 aa16.37■□□□□ 0.21
SKA3-201ENST00000298260 BRD1O95696 1058 aa16.37■□□□□ 0.21
SKA3-201ENST00000298260 PLCD3Q8N3E9 789 aa16.37■□□□□ 0.21
SKA3-201ENST00000298260 PHACTR3Q96KR7 559 aa16.37■□□□□ 0.21
SKA3-201ENST00000298260 ADGRB2O60241 1585 aa16.36■□□□□ 0.21
SKA3-201ENST00000298260 ALDH1L2Q3SY69 923 aa16.36■□□□□ 0.21
SKA3-201ENST00000298260 FBXO31Q5XUX0 539 aaPredicted RBP16.36■□□□□ 0.21
SKA3-201ENST00000298260 TRPM2O94759 1503 aa16.35■□□□□ 0.21
SKA3-201ENST00000298260 PRKAR2BP31323 418 aa16.35■□□□□ 0.21
SKA3-201ENST00000298260 TCHHQ07283 1943 aa16.35■□□□□ 0.21
SKA3-201ENST00000298260 NEO1Q92859 1461 aa16.35■□□□□ 0.21
SKA3-201ENST00000298260 FRMPD1Q5SYB0 1578 aa16.35■□□□□ 0.21
SKA3-201ENST00000298260 HECW2Q9P2P5 1572 aa16.34■□□□□ 0.21
SKA3-201ENST00000298260 NAP1L2Q9ULW6 460 aaPredicted RBP16.34■□□□□ 0.21
SKA3-201ENST00000298260 CNPY2Q9Y2B0 182 aa16.34■□□□□ 0.21
SKA3-201ENST00000298260 MED14O60244 1454 aa16.34■□□□□ 0.21
SKA3-201ENST00000298260 GIMAP6Q6P9H5 292 aa16.34■□□□□ 0.21
SKA3-201ENST00000298260 C8orf58Q8NAV2 365 aa16.34■□□□□ 0.21
SKA3-201ENST00000298260 DCTPP1Q9H773 170 aa16.33■□□□□ 0.21
SKA3-201ENST00000298260 SPTLC3Q9NUV7 552 aa16.32■□□□□ 0.2
SKA3-201ENST00000298260 KIF13AQ9H1H9 1805 aa16.32■□□□□ 0.2
SKA3-201ENST00000298260 DCTN1Q14203 1278 aa16.32■□□□□ 0.2
SKA3-201ENST00000298260 FAM83GA6ND36 823 aa16.32■□□□□ 0.2
SKA3-201ENST00000298260 MBIPQ9NS73 344 aa16.32■□□□□ 0.2
SKA3-201ENST00000298260 MLH3Q9UHC1 1453 aa16.32■□□□□ 0.2
SKA3-201ENST00000298260 IL16Q14005 1332 aa16.31■□□□□ 0.2
SKA3-201ENST00000298260 PPRC1Q5VV67 1664 aaKnown RBP16.31■□□□□ 0.2
SKA3-201ENST00000298260 DIAPH1O60610 1272 aaKnown RBP16.31■□□□□ 0.2
SKA3-201ENST00000298260 SYAP1Q96A49 352 aaPredicted RBP16.31■□□□□ 0.2
SKA3-201ENST00000298260 ERC2O15083 957 aa16.31■□□□□ 0.2
SKA3-201ENST00000298260 KIAA1524Q8TCG1 905 aa16.31■□□□□ 0.2
SKA3-201ENST00000298260 MROH1Q8NDA8 1641 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 TWISTNBQ3B726 338 aaPredicted RBP16.3■□□□□ 0.2
SKA3-201ENST00000298260 STK26Q9P289 416 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 CHMP3Q9Y3E7 222 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 RICTORQ6R327 1708 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 ABCC4O15439 1325 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 SLC24A1O60721 1099 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 REC8O95072 547 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 NCBP1Q09161 790 aaKnown RBP16.3■□□□□ 0.2
SKA3-201ENST00000298260 CASC1Q6TDU7 716 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 ANKRD7Q92527 254 aa16.3■□□□□ 0.2
SKA3-201ENST00000298260 C16orf45Q96MC5 204 aaPredicted RBP16.3■□□□□ 0.2
SKA3-201ENST00000298260 FIBPO43427 364 aa16.29■□□□□ 0.2
SKA3-201ENST00000298260 KDM4AO75164 1064 aa16.29■□□□□ 0.2
SKA3-201ENST00000298260 SRCIN1Q9C0H9 1055 aa16.29■□□□□ 0.2
SKA3-201ENST00000298260 KNDC1Q76NI1 1749 aa16.29■□□□□ 0.2
SKA3-201ENST00000298260 LRMPQ12912 555 aa16.29■□□□□ 0.2
SKA3-201ENST00000298260 DIP2CQ9Y2E4 1556 aa16.29■□□□□ 0.2
SKA3-201ENST00000298260 FYB1O15117 783 aa16.28■□□□□ 0.2
SKA3-201ENST00000298260 PTGS1P23219 599 aa16.28■□□□□ 0.2
SKA3-201ENST00000298260 SRPK2P78362 688 aaKnown RBP16.28■□□□□ 0.2
SKA3-201ENST00000298260 TRERF1Q96PN7 1200 aa16.28■□□□□ 0.2
SKA3-201ENST00000298260 ANO2Q9NQ90 1003 aa16.28■□□□□ 0.2
SKA3-201ENST00000298260 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.28■□□□□ 0.2
SKA3-201ENST00000298260 V9GYY5 206 aaPredicted RBP16.28■□□□□ 0.2
SKA3-201ENST00000298260 A0A1W2PP64 1363 aa16.27■□□□□ 0.2
SKA3-201ENST00000298260 KCNJ4P48050 445 aa16.27■□□□□ 0.2
SKA3-201ENST00000298260 CHAF1AQ13111 956 aaPredicted RBP16.27■□□□□ 0.2
SKA3-201ENST00000298260 MEIS3Q99687 375 aa16.27■□□□□ 0.2
SKA3-201ENST00000298260 GLI2P10070 1586 aa16.27■□□□□ 0.2
SKA3-201ENST00000298260 ERICH4A6NGS2 130 aa16.27■□□□□ 0.19
SKA3-201ENST00000298260 NPATQ14207 1427 aa16.27■□□□□ 0.19
SKA3-201ENST00000298260 PHF14O94880 888 aa16.26■□□□□ 0.19
SKA3-201ENST00000298260 IL25Q9H293 177 aa16.26■□□□□ 0.19
SKA3-201ENST00000298260 NRBP1Q9UHY1 535 aa16.26■□□□□ 0.19
SKA3-201ENST00000298260 CCDC183Q5T5S1 534 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 CEP85Q6P2H3 762 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 RILPL2Q969X0 211 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 ST7Q9NRC1 585 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 ANKRD36BQ8N2N9 1353 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 SBNO2Q9Y2G9 1366 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 NCBP3Q53F19 620 aaKnown RBP16.25■□□□□ 0.19
SKA3-201ENST00000298260 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.25■□□□□ 0.19
SKA3-201ENST00000298260 DIAPH3Q9NSV4 1193 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 PTCH1Q13635 1447 aa16.25■□□□□ 0.19
SKA3-201ENST00000298260 ARHGAP45Q92619 1136 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 EXOC6BQ9Y2D4 811 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 MX1P20591 662 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 CUL4AQ13619 759 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 ANKRD44Q8N8A2 993 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 FAM184AQ8NB25 1140 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 ZNF592Q92610 1267 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 CTNNA3Q9UI47 895 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 QRICH2Q9H0J4 1663 aa16.24■□□□□ 0.19
SKA3-201ENST00000298260 CTIFO43310 598 aaKnown RBP16.23■□□□□ 0.19
SKA3-201ENST00000298260 SLFN14P0C7P3 912 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 UVSSAQ2YD98 709 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms