RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 BRD4O60885 1362 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-201ENST00000297405 FGFR1OPO95684 399 aaKnown RBP5.65□□□□□ -1.5
CSMD3-201ENST00000297405 SKILP12757 684 aa5.65□□□□□ -1.5
CSMD3-201ENST00000297405 CKAP4Q07065 602 aaKnown RBP5.65□□□□□ -1.5
CSMD3-201ENST00000297405 SATB2Q9UPW6 733 aa5.65□□□□□ -1.5
CSMD3-201ENST00000297405 SYCP1Q15431 976 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 TSNAXIP1Q2TAA8 658 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 PHLDB2Q86SQ0 1253 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 LMNTD2Q8IXW0 634 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 SPRYD3Q8NCJ5 442 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 USO1O60763 962 aaKnown RBP5.65□□□□□ -1.51
CSMD3-201ENST00000297405 ARHGAP29Q52LW3 1261 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 WDR78Q5VTH9 848 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 RNF8O76064 485 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC40Q4G0X9 1142 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 CACNA2D3Q8IZS8 1091 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 PAF1Q8N7H5 531 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 VCX3BQ9H321 246 aa5.65□□□□□ -1.51
CSMD3-201ENST00000297405 SPATS2LQ9NUQ6 558 aaKnown RBP5.65□□□□□ -1.51
CSMD3-201ENST00000297405 OPA1O60313 960 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 RASSF2P50749 326 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 PPP1R1BQ9UD71 204 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 SRPK2P78362 688 aaKnown RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 MAP3K9P80192 1104 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 TAF7Q15545 349 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 MSL1Q68DK7 614 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 MCTP1Q6DN14 999 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 RPAP2Q8IXW5 612 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 SRCIN1Q9C0H9 1055 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 PDCD7Q8N8D1 485 aaKnown RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 OGFRQ9NZT2 677 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 LARSQ9P2J5 1176 aaKnown RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 KNTC1P50748 2209 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 SLC8A1P32418 973 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 CDKL5O76039 1030 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 PODNQ7Z5L7 613 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 JAKMIP2Q96AA8 810 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 UIMC1Q96RL1 719 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 EFCC1Q9HA90 598 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 TERF2IPQ9NYB0 399 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 MAP2K2P36507 400 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 EIF5P55010 431 aaKnown RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 PDE3AQ14432 1141 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 HSP90AA5PQ58FG0 334 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 PRDM2Q13029 1718 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 ZNF853P0CG23 659 aa5.64□□□□□ -1.51
CSMD3-201ENST00000297405 ZKSCAN8Q15776 578 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 SCAND2PQ9GZW5 306 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-201ENST00000297405 EPB41L2O43491 1005 aaKnown RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 NBPF7P0C2Y1 421 aaPredicted RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 IFI16Q16666 785 aaKnown RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 GORABQ5T7V8 394 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC150Q8NCX0 1101 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 SMC6Q96SB8 1091 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 CLUL1Q15846 466 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 CEP135Q66GS9 1140 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 TCEAL9Q9UHQ7 104 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 RLBP1P12271 317 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC27Q2M243 656 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 TPRNQ4KMQ1 711 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 GFM2Q969S9 779 aaKnown RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 BCAP29Q9UHQ4 241 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC196A0A1B0GTZ2 297 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 MVPQ14764 893 aaKnown RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 PAFAH1B1P43034 410 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 MORC1Q86VD1 984 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 ARHGAP24Q8N264 748 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 MAP3K7CLP57077 242 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 LACTBP83111 547 aaPredicted RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 AEBP2Q6ZN18 517 aaPredicted RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC183Q5T5S1 534 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 TTC12Q9H892 705 aaPredicted RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 SART3Q15020 963 aaKnown RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 SPTBP11277 2137 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 RRBP1Q9P2E9 1410 aaKnown RBP5.63□□□□□ -1.51
CSMD3-201ENST00000297405 ESPL1Q14674 2120 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 OTUD6BQ8N6M0 293 aa5.63□□□□□ -1.51
CSMD3-201ENST00000297405 MCM4P33991 863 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ATP11AP98196 1134 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 DBN1Q16643 649 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 MAP3K21Q5TCX8 1036 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ERICH2A1L162 156 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 CDC45O75419 566 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 PRPHP41219 470 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 KIF21BO75037 1637 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ARMC9Q7Z3E5 817 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 IPO4Q8TEX9 1081 aaKnown RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ERICH4A6NGS2 130 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 NDC80O14777 642 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 MAP3K11Q16584 847 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 CNPY4Q8N129 248 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 TNMDQ9H2S6 317 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 SCN1AP35498 2009 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ELP1O95163 1332 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 MAP4K4O95819 1239 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ZNF638Q14966 1978 aaKnown RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ARID4AP29374 1257 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 FBF1Q8TES7 1133 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 CAPZA3Q96KX2 299 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ALDH3A1P30838 453 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms