RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 HSPA4P34932 840 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 RAB3GAP1Q15042 981 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 ARMC2Q8NEN0 867 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 VPS8Q8N3P4 1428 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 MMP14P50281 582 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 GYS2P54840 703 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 CCDC186Q7Z3E2 898 aa13.76□□□□□ -0.21
SNIP1-201ENST00000296215 EFCAB13Q8IY85 973 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 CEP112Q8N8E3 955 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 LNPKQ9C0E8 428 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 TRIM66O15016 1216 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 PRR29P0C7W0 189 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 FBXW7Q969H0 707 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 MED4Q9NPJ6 270 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 CEP164Q9UPV0 1460 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 BCL2L13Q9BXK5 485 aa13.75□□□□□ -0.21
SNIP1-201ENST00000296215 CCDC7Q96M83 1385 aa13.74□□□□□ -0.21
SNIP1-201ENST00000296215 LRRC23Q53EV4 343 aaPredicted RBP13.74□□□□□ -0.21
SNIP1-201ENST00000296215 LIG3P49916 1009 aa13.74□□□□□ -0.21
SNIP1-201ENST00000296215 TAX1BP1Q86VP1 789 aa13.74□□□□□ -0.21
SNIP1-201ENST00000296215 ACRBPQ8NEB7 543 aa13.74□□□□□ -0.21
SNIP1-201ENST00000296215 JARID2Q92833 1246 aaPredicted RBP13.74□□□□□ -0.21
SNIP1-201ENST00000296215 FAM210AQ96ND0 272 aa13.74□□□□□ -0.21
SNIP1-201ENST00000296215 VPS37CA5D8V6 355 aaPredicted RBP13.73□□□□□ -0.21
SNIP1-201ENST00000296215 PNISRQ8TF01 805 aaKnown RBP13.73□□□□□ -0.21
SNIP1-201ENST00000296215 PHACTR2O75167 634 aa13.73□□□□□ -0.21
SNIP1-201ENST00000296215 KIF3BO15066 747 aa13.73□□□□□ -0.21
SNIP1-201ENST00000296215 RANBP1P43487 201 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 KANK4Q5T7N3 995 aaPredicted RBP13.72□□□□□ -0.21
SNIP1-201ENST00000296215 CFAP53Q96M91 514 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 SLC52A1Q9NWF4 448 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 A0A087WUV0 522 aaPredicted RBP13.72□□□□□ -0.21
SNIP1-201ENST00000296215 ACTN2P35609 894 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 CCDC27Q2M243 656 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 TTC19Q6DKK2 380 aaPredicted RBP13.72□□□□□ -0.21
SNIP1-201ENST00000296215 CTAGE5O15320 804 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 TPD52L2O43399 206 aaKnown RBP13.72□□□□□ -0.21
SNIP1-201ENST00000296215 SLFN14P0C7P3 912 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 KIF5BP33176 963 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 FKBP5Q13451 457 aaPredicted RBP13.72□□□□□ -0.21
SNIP1-201ENST00000296215 PDILTQ8N807 584 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 CCDC114Q96M63 670 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 TNMDQ9H2S6 317 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 SMC3Q9UQE7 1217 aa13.72□□□□□ -0.21
SNIP1-201ENST00000296215 SMC1AQ14683 1233 aaKnown RBP13.71□□□□□ -0.21
SNIP1-201ENST00000296215 CAND2O75155 1236 aa13.71□□□□□ -0.21
SNIP1-201ENST00000296215 CAGE1Q8TC20 777 aa13.71□□□□□ -0.21
SNIP1-201ENST00000296215 POTEB2H3BUK9 544 aa13.71□□□□□ -0.21
SNIP1-201ENST00000296215 SSBP05455 408 aaKnown RBP eCLIP13.71□□□□□ -0.21
SNIP1-201ENST00000296215 INF2Q27J81 1249 aa13.71□□□□□ -0.21
SNIP1-201ENST00000296215 MAP9Q49MG5 647 aa13.71□□□□□ -0.21
SNIP1-201ENST00000296215 CDC45O75419 566 aa13.71□□□□□ -0.22
SNIP1-201ENST00000296215 CTCFLQ8NI51 663 aaPredicted RBP13.71□□□□□ -0.22
SNIP1-201ENST00000296215 SAAL1Q96ER3 474 aa13.71□□□□□ -0.22
SNIP1-201ENST00000296215 WDR33Q9C0J8 1336 aaKnown RBP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 CDCA8Q53HL2 280 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 MORC2Q9Y6X9 1032 aaPredicted RBP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 PTGS1P23219 599 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 SFPQP23246 707 aaKnown RBP eCLIP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 NFXL1Q6ZNB6 911 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 ARMC9Q7Z3E5 817 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 CTNNA3Q9UI47 895 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 SF3A1Q15459 793 aaKnown RBP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 CEP85LQ5SZL2 805 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 INTS3Q68E01 1043 aaKnown RBP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 CCDC50Q8IVM0 306 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 SYCP1Q15431 976 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 PDCD2Q16342 344 aaPredicted RBP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 WHAMMP3Q1A5X7 153 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 FBXO18Q8NFZ0 1043 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 WHAMMQ8TF30 809 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 RBM33Q96EV2 1170 aaKnown RBP13.7□□□□□ -0.22
SNIP1-201ENST00000296215 TRIM4Q9C037 500 aa13.7□□□□□ -0.22
SNIP1-201ENST00000296215 MCM2P49736 904 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 NEK4P51957 841 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 RWDD2BP57060 319 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 TRAF1Q13077 416 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 ZKSCAN2Q63HK3 967 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 L3MBTL2Q969R5 705 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.69□□□□□ -0.22
SNIP1-201ENST00000296215 FHAD1B1AJZ9 1412 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 SPAG9O60271 1321 aaKnown RBP13.69□□□□□ -0.22
SNIP1-201ENST00000296215 PSEN1P49768 467 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 PDE3AQ14432 1141 aa13.69□□□□□ -0.22
SNIP1-201ENST00000296215 SKILP12757 684 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 CAPN7Q9Y6W3 813 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 EIF3CLB5ME19 914 aaKnown RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 SEC24BO95487 1268 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 MAP3K11Q16584 847 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 TSR1Q2NL82 804 aaKnown RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 SMC5Q8IY18 1101 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 EIF3CQ99613 913 aaKnown RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 NUP62CLQ9H1M0 184 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 CYP2C19P33261 490 aa13.68□□□□□ -0.22
SNIP1-201ENST00000296215 ZMAT2Q96NC0 199 aaKnown RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 CHCHD3Q9NX63 227 aaKnown RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 NAIF1Q69YI7 327 aaPredicted RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 ZNF215Q9UL58 517 aaPredicted RBP13.68□□□□□ -0.22
SNIP1-201ENST00000296215 KIF2CQ99661 725 aa13.67□□□□□ -0.22
SNIP1-201ENST00000296215 TACO1Q9BSH4 297 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms