RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 KIAA0232Q92628 1395 aa12.22□□□□□ -0.45
TRIM55-201ENST00000276573 LTN1O94822 1766 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 HAP1P54257 671 aaPredicted RBP12.21□□□□□ -0.45
TRIM55-201ENST00000276573 NBPF6Q5VWK0 638 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 NBPF4Q96M43 638 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 USP19O94966 1318 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 KIF1AQ12756 1690 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 DCCP43146 1447 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 MST1RQ04912 1400 aa12.21□□□□□ -0.45
TRIM55-201ENST00000276573 ZBTB7CA1YPR0 619 aa12.21□□□□□ -0.46
TRIM55-201ENST00000276573 GNAT3A8MTJ3 354 aa12.21□□□□□ -0.46
TRIM55-201ENST00000276573 SLIT3O75094 1523 aa12.2□□□□□ -0.46
TRIM55-201ENST00000276573 CADPS2Q86UW7 1296 aa12.2□□□□□ -0.46
TRIM55-201ENST00000276573 USHBP1Q8N6Y0 703 aa12.2□□□□□ -0.46
TRIM55-201ENST00000276573 ZBTB40Q9NUA8 1239 aa12.2□□□□□ -0.46
TRIM55-201ENST00000276573 TRPM3Q9HCF6 1732 aaPredicted RBP12.2□□□□□ -0.46
TRIM55-201ENST00000276573 RGS3P49796 1198 aa12.19□□□□□ -0.46
TRIM55-201ENST00000276573 KRT24Q2M2I5 525 aa12.19□□□□□ -0.46
TRIM55-201ENST00000276573 MIS18AQ9NYP9 233 aa12.19□□□□□ -0.46
TRIM55-201ENST00000276573 PHRF1Q9P1Y6 1649 aaKnown RBP12.19□□□□□ -0.46
TRIM55-201ENST00000276573 IL17REQ8NFR9 667 aa12.19□□□□□ -0.46
TRIM55-201ENST00000276573 TSPYL4Q9UJ04 414 aa12.19□□□□□ -0.46
TRIM55-201ENST00000276573 PLEKHG5O94827 1062 aa12.18□□□□□ -0.46
TRIM55-201ENST00000276573 API5Q9BZZ5 524 aaKnown RBP12.18□□□□□ -0.46
TRIM55-201ENST00000276573 MSH6P52701 1360 aa12.18□□□□□ -0.46
TRIM55-201ENST00000276573 ZBTB7BO15156 539 aaPredicted RBP12.18□□□□□ -0.46
TRIM55-201ENST00000276573 MSH5O43196 834 aa12.18□□□□□ -0.46
TRIM55-201ENST00000276573 HDAC1Q13547 482 aaPredicted RBP12.18□□□□□ -0.46
TRIM55-201ENST00000276573 CHMP4BQ9H444 224 aaKnown RBP12.18□□□□□ -0.46
TRIM55-201ENST00000276573 MAP3K5Q99683 1374 aa12.17□□□□□ -0.46
TRIM55-201ENST00000276573 ABCC4O15439 1325 aa12.17□□□□□ -0.46
TRIM55-201ENST00000276573 DDX17Q92841 729 aaKnown RBP12.17□□□□□ -0.46
TRIM55-201ENST00000276573 LRRC59Q96AG4 307 aaKnown RBP12.17□□□□□ -0.46
TRIM55-201ENST00000276573 PDZRN3Q9UPQ7 1066 aa12.17□□□□□ -0.46
TRIM55-201ENST00000276573 TAF7Q15545 349 aaPredicted RBP12.16□□□□□ -0.46
TRIM55-201ENST00000276573 FAM161AQ3B820 660 aa12.16□□□□□ -0.46
TRIM55-201ENST00000276573 ANKRD24Q8TF21 1146 aa12.16□□□□□ -0.46
TRIM55-201ENST00000276573 BABAM1Q9NWV8 329 aa12.16□□□□□ -0.46
TRIM55-201ENST00000276573 LMTK3Q96Q04 1460 aa12.16□□□□□ -0.46
TRIM55-201ENST00000276573 NPHP3Q7Z494 1330 aa12.16□□□□□ -0.46
TRIM55-201ENST00000276573 AXIN2Q9Y2T1 843 aa12.16□□□□□ -0.46
TRIM55-201ENST00000276573 ALS2Q96Q42 1657 aa12.15□□□□□ -0.46
TRIM55-201ENST00000276573 ANP32AP39687 249 aaKnown RBP12.14□□□□□ -0.47
TRIM55-201ENST00000276573 ZC3H6P61129 1189 aaKnown RBP12.14□□□□□ -0.47
TRIM55-201ENST00000276573 C8orf34Q49A92 452 aa12.14□□□□□ -0.47
TRIM55-201ENST00000276573 PLEKHO1Q53GL0 409 aaPredicted RBP12.14□□□□□ -0.47
TRIM55-201ENST00000276573 STRCQ7RTU9 1775 aa12.14□□□□□ -0.47
TRIM55-201ENST00000276573 LRRC37A3O60309 1634 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 SLC4A2P04920 1241 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 AMOTQ4VCS5 1084 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 INTS3Q68E01 1043 aaKnown RBP12.13□□□□□ -0.47
TRIM55-201ENST00000276573 SMC5Q8IY18 1101 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 NCAPD2Q15021 1401 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 MED1Q15648 1581 aaPredicted RBP12.13□□□□□ -0.47
TRIM55-201ENST00000276573 RGPD2P0DJD1 1756 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 PTPRCP08575 1304 aa12.13□□□□□ -0.47
TRIM55-201ENST00000276573 AKAP4Q5JQC9 854 aa12.12□□□□□ -0.47
TRIM55-201ENST00000276573 LGR6Q9HBX8 967 aa12.12□□□□□ -0.47
TRIM55-201ENST00000276573 CEMIPQ8WUJ3 1361 aa12.12□□□□□ -0.47
TRIM55-201ENST00000276573 SOS1Q07889 1333 aaPredicted RBP12.11□□□□□ -0.47
TRIM55-201ENST00000276573 SPATA31A3Q5VYP0 1347 aa12.11□□□□□ -0.47
TRIM55-201ENST00000276573 ZNF530Q6P9A1 599 aaPredicted RBP12.11□□□□□ -0.47
TRIM55-201ENST00000276573 BRINP3Q76B58 766 aa12.11□□□□□ -0.47
TRIM55-201ENST00000276573 IPO9Q96P70 1041 aaKnown RBP12.11□□□□□ -0.47
TRIM55-201ENST00000276573 XIRP1Q702N8 1843 aaKnown RBP12.11□□□□□ -0.47
TRIM55-201ENST00000276573 TNS3Q68CZ2 1445 aa12.11□□□□□ -0.47
TRIM55-201ENST00000276573 ZNF335Q9H4Z2 1342 aaPredicted RBP12.1□□□□□ -0.47
TRIM55-201ENST00000276573 RGS12O14924 1447 aa12.1□□□□□ -0.47
TRIM55-201ENST00000276573 PXDNQ92626 1479 aa12.1□□□□□ -0.47
TRIM55-201ENST00000276573 CCDC30Q5VVM6 783 aa12.1□□□□□ -0.47
TRIM55-201ENST00000276573 G2E3Q7L622 706 aa12.1□□□□□ -0.47
TRIM55-201ENST00000276573 NPM2Q86SE8 214 aaKnown RBP12.1□□□□□ -0.47
TRIM55-201ENST00000276573 CABLES1Q8TDN4 633 aa12.1□□□□□ -0.47
TRIM55-201ENST00000276573 ERBB3P21860 1342 aa12.09□□□□□ -0.47
TRIM55-201ENST00000276573 STK31Q9BXU1 1019 aa12.09□□□□□ -0.47
TRIM55-201ENST00000276573 SLAIN2Q9P270 581 aa12.09□□□□□ -0.47
TRIM55-201ENST00000276573 RNMTO43148 476 aaKnown RBP12.09□□□□□ -0.47
TRIM55-201ENST00000276573 C1orf115Q9H7X2 142 aa12.09□□□□□ -0.47
TRIM55-201ENST00000276573 RGPD5Q99666 1765 aa12.08□□□□□ -0.48
TRIM55-201ENST00000276573 CAMTA1Q9Y6Y1 1673 aa12.08□□□□□ -0.48
TRIM55-201ENST00000276573 NUCB1Q02818 461 aa12.08□□□□□ -0.48
TRIM55-201ENST00000276573 C1orf141Q5JVX7 400 aa12.08□□□□□ -0.48
TRIM55-201ENST00000276573 MPRIPQ6WCQ1 1025 aa12.08□□□□□ -0.48
TRIM55-201ENST00000276573 SIRT2Q8IXJ6 389 aa12.08□□□□□ -0.48
TRIM55-201ENST00000276573 EIF4A1P60842 406 aaKnown RBP12.07□□□□□ -0.48
TRIM55-201ENST00000276573 TEFQ10587 303 aa12.07□□□□□ -0.48
TRIM55-201ENST00000276573 GCC1Q96CN9 775 aa12.07□□□□□ -0.48
TRIM55-201ENST00000276573 NLRP2Q9NX02 1062 aa12.07□□□□□ -0.48
TRIM55-201ENST00000276573 LMO7Q8WWI1 1683 aa12.07□□□□□ -0.48
TRIM55-201ENST00000276573 COL18A1P39060 1754 aa12.06□□□□□ -0.48
TRIM55-201ENST00000276573 BTBD11A6QL63 1104 aa12.06□□□□□ -0.48
TRIM55-201ENST00000276573 CHRNA2Q15822 529 aa12.06□□□□□ -0.48
TRIM55-201ENST00000276573 SOS2Q07890 1332 aaPredicted RBP12.06□□□□□ -0.48
TRIM55-201ENST00000276573 CCT4P50991 539 aaKnown RBP12.05□□□□□ -0.48
TRIM55-201ENST00000276573 CHD1LQ86WJ1 897 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 RAPGEF4Q8WZA2 1011 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 NECTIN2Q92692 538 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 ZBTB47Q9UFB7 747 aaPredicted RBP12.05□□□□□ -0.48
TRIM55-201ENST00000276573 CPDO75976 1380 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 F6X3S4 739 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms