RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 LTV1Q96GA3 475 aaPredicted RBP19.55■□□□□ 0.72
SF3B4-201ENST00000271628 ARHGEF25Q86VW2 580 aa19.54■□□□□ 0.72
SF3B4-201ENST00000271628 IPO9Q96P70 1041 aaKnown RBP19.54■□□□□ 0.72
SF3B4-201ENST00000271628 STRCQ7RTU9 1775 aa19.54■□□□□ 0.72
SF3B4-201ENST00000271628 ARHGAP45Q92619 1136 aa19.53■□□□□ 0.72
SF3B4-201ENST00000271628 TNNQ9UQP3 1299 aa19.53■□□□□ 0.72
SF3B4-201ENST00000271628 TSPYL6Q8N831 410 aa19.53■□□□□ 0.72
SF3B4-201ENST00000271628 DDX19BQ9UMR2 479 aa19.53■□□□□ 0.72
SF3B4-201ENST00000271628 NPHP3Q7Z494 1330 aa19.52■□□□□ 0.72
SF3B4-201ENST00000271628 CRB1P82279 1406 aa19.52■□□□□ 0.71
SF3B4-201ENST00000271628 KIAA0232Q92628 1395 aa19.51■□□□□ 0.71
SF3B4-201ENST00000271628 GNAT3A8MTJ3 354 aa19.51■□□□□ 0.71
SF3B4-201ENST00000271628 MRPL50Q8N5N7 158 aaKnown RBP19.51■□□□□ 0.71
SF3B4-201ENST00000271628 C8orf58Q8NAV2 365 aa19.51■□□□□ 0.71
SF3B4-201ENST00000271628 ALS2Q96Q42 1657 aa19.51■□□□□ 0.71
SF3B4-201ENST00000271628 ELL2O00472 640 aaPredicted RBP19.5■□□□□ 0.71
SF3B4-201ENST00000271628 ZBTB7CA1YPR0 619 aa19.49■□□□□ 0.71
SF3B4-201ENST00000271628 NBPF6Q5VWK0 638 aa19.49■□□□□ 0.71
SF3B4-201ENST00000271628 NBPF4Q96M43 638 aa19.49■□□□□ 0.71
SF3B4-201ENST00000271628 IGHDP01880 384 aa19.48■□□□□ 0.71
SF3B4-201ENST00000271628 CHMP4BQ9H444 224 aaKnown RBP19.48■□□□□ 0.71
SF3B4-201ENST00000271628 ITPRIPQ8IWB1 547 aa19.47■□□□□ 0.71
SF3B4-201ENST00000271628 XIRP1Q702N8 1843 aaKnown RBP19.47■□□□□ 0.71
SF3B4-201ENST00000271628 MAP3K5Q99683 1374 aa19.47■□□□□ 0.71
SF3B4-201ENST00000271628 RWDD1Q9H446 243 aaPredicted RBP19.47■□□□□ 0.71
SF3B4-201ENST00000271628 BABAM1Q9NWV8 329 aa19.46■□□□□ 0.71
SF3B4-201ENST00000271628 ZBTB47Q9UFB7 747 aaPredicted RBP19.46■□□□□ 0.71
SF3B4-201ENST00000271628 TMEM57Q8N5G2 664 aa19.45■□□□□ 0.7
SF3B4-201ENST00000271628 TSPYL4Q9UJ04 414 aa19.45■□□□□ 0.7
SF3B4-201ENST00000271628 PCDHB15Q9Y5E8 787 aa19.45■□□□□ 0.7
SF3B4-201ENST00000271628 USHBP1Q8N6Y0 703 aa19.45■□□□□ 0.7
SF3B4-201ENST00000271628 ANKRD24Q8TF21 1146 aa19.44■□□□□ 0.7
SF3B4-201ENST00000271628 API5Q9BZZ5 524 aaKnown RBP19.44■□□□□ 0.7
SF3B4-201ENST00000271628 PDE4AP27815 886 aa19.44■□□□□ 0.7
SF3B4-201ENST00000271628 BACH2Q9BYV9 841 aa19.44■□□□□ 0.7
SF3B4-201ENST00000271628 TNS3Q68CZ2 1445 aa19.43■□□□□ 0.7
SF3B4-201ENST00000271628 LRRC37A3O60309 1634 aa19.43■□□□□ 0.7
SF3B4-201ENST00000271628 AMOTQ4VCS5 1084 aa19.43■□□□□ 0.7
SF3B4-201ENST00000271628 MED1Q15648 1581 aaPredicted RBP19.42■□□□□ 0.7
SF3B4-201ENST00000271628 NCAPD2Q15021 1401 aa19.42■□□□□ 0.7
SF3B4-201ENST00000271628 PLEKHG5O94827 1062 aa19.42■□□□□ 0.7
SF3B4-201ENST00000271628 PLEKHO1Q53GL0 409 aaPredicted RBP19.42■□□□□ 0.7
SF3B4-201ENST00000271628 PXDNQ92626 1479 aa19.41■□□□□ 0.7
SF3B4-201ENST00000271628 RGPD2P0DJD1 1756 aa19.41■□□□□ 0.7
SF3B4-201ENST00000271628 SPATA31A3Q5VYP0 1347 aa19.41■□□□□ 0.7
SF3B4-201ENST00000271628 ZNF335Q9H4Z2 1342 aaPredicted RBP19.41■□□□□ 0.7
SF3B4-201ENST00000271628 IL17REQ8NFR9 667 aa19.41■□□□□ 0.7
SF3B4-201ENST00000271628 DDX17Q92841 729 aaKnown RBP19.41■□□□□ 0.7
SF3B4-201ENST00000271628 LRRC59Q96AG4 307 aaKnown RBP19.41■□□□□ 0.7
SF3B4-201ENST00000271628 ZBTB40Q9NUA8 1239 aa19.41■□□□□ 0.7
SF3B4-201ENST00000271628 SOS1Q07889 1333 aaPredicted RBP19.41■□□□□ 0.7
SF3B4-201ENST00000271628 ZC3H6P61129 1189 aaKnown RBP19.4■□□□□ 0.7
SF3B4-201ENST00000271628 TAF7Q15545 349 aaPredicted RBP19.4■□□□□ 0.7
SF3B4-201ENST00000271628 AXIN2Q9Y2T1 843 aa19.4■□□□□ 0.7
SF3B4-201ENST00000271628 ABCC4O15439 1325 aa19.4■□□□□ 0.7
SF3B4-201ENST00000271628 BRINP3Q76B58 766 aa19.4■□□□□ 0.7
SF3B4-201ENST00000271628 MIS18AQ9NYP9 233 aa19.39■□□□□ 0.69
SF3B4-201ENST00000271628 SLAIN2Q9P270 581 aa19.39■□□□□ 0.69
SF3B4-201ENST00000271628 CAMTA1Q9Y6Y1 1673 aa19.39■□□□□ 0.69
SF3B4-201ENST00000271628 ERBB3P21860 1342 aa19.39■□□□□ 0.69
SF3B4-201ENST00000271628 HDAC1Q13547 482 aaPredicted RBP19.39■□□□□ 0.69
SF3B4-201ENST00000271628 AKAP4Q5JQC9 854 aa19.39■□□□□ 0.69
SF3B4-201ENST00000271628 PTPRCP08575 1304 aa19.38■□□□□ 0.69
SF3B4-201ENST00000271628 KRT24Q2M2I5 525 aa19.38■□□□□ 0.69
SF3B4-201ENST00000271628 CEMIPQ8WUJ3 1361 aa19.38■□□□□ 0.69
SF3B4-201ENST00000271628 SKAP1Q86WV1 359 aa19.37■□□□□ 0.69
SF3B4-201ENST00000271628 ABCC6O95255 1503 aa19.37■□□□□ 0.69
SF3B4-201ENST00000271628 ZBTB7BO15156 539 aaPredicted RBP19.37■□□□□ 0.69
SF3B4-201ENST00000271628 RGPD5Q99666 1765 aa19.36■□□□□ 0.69
SF3B4-201ENST00000271628 LMO7Q8WWI1 1683 aa19.35■□□□□ 0.69
SF3B4-201ENST00000271628 RGS3P49796 1198 aa19.35■□□□□ 0.69
SF3B4-201ENST00000271628 ZNF530Q6P9A1 599 aaPredicted RBP19.35■□□□□ 0.69
SF3B4-201ENST00000271628 C1orf141Q5JVX7 400 aa19.34■□□□□ 0.69
SF3B4-201ENST00000271628 CPDO75976 1380 aa19.34■□□□□ 0.69
SF3B4-201ENST00000271628 SLC4A2P04920 1241 aa19.34■□□□□ 0.69
SF3B4-201ENST00000271628 CHMP4AQ9BY43 222 aa19.34■□□□□ 0.69
SF3B4-201ENST00000271628 SOS2Q07890 1332 aaPredicted RBP19.33■□□□□ 0.69
SF3B4-201ENST00000271628 STK31Q9BXU1 1019 aa19.33■□□□□ 0.69
SF3B4-201ENST00000271628 FAM161AQ3B820 660 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 CCDC30Q5VVM6 783 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 INTS3Q68E01 1043 aaKnown RBP19.32■□□□□ 0.68
SF3B4-201ENST00000271628 CRYBG1Q9Y4K1 1723 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 COL18A1P39060 1754 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 PLEKHG2Q9H7P9 1386 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 OVOS2A0A0G2JMS6 1433 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 CABLES1Q8TDN4 633 aa19.32■□□□□ 0.68
SF3B4-201ENST00000271628 TEFQ10587 303 aa19.31■□□□□ 0.68
SF3B4-201ENST00000271628 FAM208AQ9UK61 1670 aaKnown RBP19.31■□□□□ 0.68
SF3B4-201ENST00000271628 RAPGEF4Q8WZA2 1011 aa19.31■□□□□ 0.68
SF3B4-201ENST00000271628 LGR6Q9HBX8 967 aa19.31■□□□□ 0.68
SF3B4-201ENST00000271628 BCL11AQ9H165 835 aa19.3■□□□□ 0.68
SF3B4-201ENST00000271628 NLRP2Q9NX02 1062 aa19.3■□□□□ 0.68
SF3B4-201ENST00000271628 PDZRN3Q9UPQ7 1066 aa19.3■□□□□ 0.68
SF3B4-201ENST00000271628 CACNA1FO60840 1977 aa19.3■□□□□ 0.68
SF3B4-201ENST00000271628 NBR1Q14596 966 aa19.29■□□□□ 0.68
SF3B4-201ENST00000271628 NPM2Q86SE8 214 aaKnown RBP19.29■□□□□ 0.68
SF3B4-201ENST00000271628 SMC5Q8IY18 1101 aa19.29■□□□□ 0.68
SF3B4-201ENST00000271628 RNMTO43148 476 aaKnown RBP19.28■□□□□ 0.68
SF3B4-201ENST00000271628 CSB-PGBD3P0DP91 1061 aa19.28■□□□□ 0.68
SF3B4-201ENST00000271628 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms