RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PLEKHO1Q53GL0 409 aaPredicted RBP18.26■□□□□ 0.51
SS18-201ENST00000269137 MCM10Q7L590 875 aa18.26■□□□□ 0.51
SS18-201ENST00000269137 NLRP2Q9NX02 1062 aa18.26■□□□□ 0.51
SS18-201ENST00000269137 MAP3K5Q99683 1374 aa18.26■□□□□ 0.51
SS18-201ENST00000269137 CRB1P82279 1406 aa18.26■□□□□ 0.51
SS18-201ENST00000269137 PHLPP1O60346 1717 aa18.25■□□□□ 0.51
SS18-201ENST00000269137 COL16A1Q07092 1604 aaPredicted RBP18.25■□□□□ 0.51
SS18-201ENST00000269137 CSB-PGBD3P0DP91 1061 aa18.25■□□□□ 0.51
SS18-201ENST00000269137 MBIPQ9NS73 344 aa18.25■□□□□ 0.51
SS18-201ENST00000269137 LAS1LQ9Y4W2 734 aaKnown RBP18.25■□□□□ 0.51
SS18-201ENST00000269137 UBAP1LF5GYI3 381 aa18.24■□□□□ 0.51
SS18-201ENST00000269137 CHL1O00533 1208 aa18.24■□□□□ 0.51
SS18-201ENST00000269137 WDR17Q8IZU2 1322 aa18.24■□□□□ 0.51
SS18-201ENST00000269137 BCAR3O75815 825 aa18.23■□□□□ 0.51
SS18-201ENST00000269137 COL5A2P05997 1499 aaPredicted RBP18.23■□□□□ 0.51
SS18-201ENST00000269137 PLIN1O60240 522 aa18.23■□□□□ 0.51
SS18-201ENST00000269137 ZNF428Q96B54 188 aa18.23■□□□□ 0.51
SS18-201ENST00000269137 LRRC37A3O60309 1634 aa18.22■□□□□ 0.51
SS18-201ENST00000269137 PIP4K2BP78356 416 aa18.22■□□□□ 0.51
SS18-201ENST00000269137 RAPGEF4Q8WZA2 1011 aa18.22■□□□□ 0.51
SS18-201ENST00000269137 PPP4R2Q9NY27 417 aa18.22■□□□□ 0.51
SS18-201ENST00000269137 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.22■□□□□ 0.513e-7■■□□□ 13.5
SS18-201ENST00000269137 AKAP4Q5JQC9 854 aa18.21■□□□□ 0.51
SS18-201ENST00000269137 IL17REQ8NFR9 667 aa18.21■□□□□ 0.51
SS18-201ENST00000269137 ZNF530Q6P9A1 599 aaPredicted RBP18.21■□□□□ 0.51
SS18-201ENST00000269137 CEMIPQ8WUJ3 1361 aa18.2■□□□□ 0.5
SS18-201ENST00000269137 BABAM1Q9NWV8 329 aa18.2■□□□□ 0.5
SS18-201ENST00000269137 TATP17735 454 aaPredicted RBP18.19■□□□□ 0.5
SS18-201ENST00000269137 CERKQ8TCT0 537 aa18.19■□□□□ 0.5
SS18-201ENST00000269137 COL14A1Q05707 1796 aaKnown RBP18.19■□□□□ 0.5
SS18-201ENST00000269137 ALDH1L2Q3SY69 923 aa18.19■□□□□ 0.5
SS18-201ENST00000269137 CARD10Q9BWT7 1032 aa18.19■□□□□ 0.5
SS18-201ENST00000269137 VAMP4O75379 141 aa18.18■□□□□ 0.5
SS18-201ENST00000269137 C1orf141Q5JVX7 400 aa18.18■□□□□ 0.5
SS18-201ENST00000269137 MEGF6O75095 1541 aa18.18■□□□□ 0.5
SS18-201ENST00000269137 OVOS2A0A0G2JMS6 1433 aa18.17■□□□□ 0.5
SS18-201ENST00000269137 PDE3AQ14432 1141 aa18.17■□□□□ 0.5
SS18-201ENST00000269137 TAF7Q15545 349 aaPredicted RBP18.16■□□□□ 0.5
SS18-201ENST00000269137 TOM1L2Q6ZVM7 507 aa18.16■□□□□ 0.5
SS18-201ENST00000269137 SSH1Q8WYL5 1049 aa18.16■□□□□ 0.5
SS18-201ENST00000269137 SPG7Q9UQ90 795 aa18.16■□□□□ 0.5
SS18-201ENST00000269137 BRPF1P55201 1214 aaPredicted RBP18.16■□□□□ 0.5
SS18-201ENST00000269137 EVA1CP58658 441 aa18.16■□□□□ 0.5
SS18-201ENST00000269137 C20orf194Q5TEA3 1177 aa18.16■□□□□ 0.5
SS18-201ENST00000269137 PELP1Q8IZL8 1130 aaKnown RBP18.16■□□□□ 0.5
SS18-201ENST00000269137 C8orf58Q8NAV2 365 aa18.16■□□□□ 0.5
SS18-201ENST00000269137 TWISTNBQ3B726 338 aaPredicted RBP18.15■□□□□ 0.5
SS18-201ENST00000269137 TSPYL6Q8N831 410 aa18.15■□□□□ 0.5
SS18-201ENST00000269137 EXOC6Q8TAG9 804 aa18.15■□□□□ 0.5
SS18-201ENST00000269137 SMC4Q9NTJ3 1288 aa18.15■□□□□ 0.5
SS18-201ENST00000269137 TSPYL4Q9UJ04 414 aa18.15■□□□□ 0.5
SS18-201ENST00000269137 BTG4Q9NY30 223 aa18.14■□□□□ 0.5
SS18-201ENST00000269137 PKD1L3Q7Z443 1732 aa18.14■□□□□ 0.49
SS18-201ENST00000269137 LARP1Q6PKG0 1096 aaKnown RBP18.14■□□□□ 0.49
SS18-201ENST00000269137 BCL2L13Q9BXK5 485 aa18.14■□□□□ 0.49
SS18-201ENST00000269137 LGR6Q9HBX8 967 aa18.14■□□□□ 0.49
SS18-201ENST00000269137 ADAMTS7Q9UKP4 1686 aa18.13■□□□□ 0.49
SS18-201ENST00000269137 RNMTO43148 476 aaKnown RBP18.13■□□□□ 0.49
SS18-201ENST00000269137 CRBNQ96SW2 442 aa18.13■□□□□ 0.49
SS18-201ENST00000269137 STRN4Q9NRL3 753 aa18.13■□□□□ 0.49
SS18-201ENST00000269137 MIS18AQ9NYP9 233 aa18.13■□□□□ 0.49
SS18-201ENST00000269137 CANXP27824 592 aaKnown RBP18.12■□□□□ 0.49
SS18-201ENST00000269137 MPRIPQ6WCQ1 1025 aa18.12■□□□□ 0.49
SS18-201ENST00000269137 PARP4Q9UKK3 1724 aaKnown RBP18.12■□□□□ 0.49
SS18-201ENST00000269137 FRAT1Q92837 279 aaPredicted RBP18.12■□□□□ 0.49
SS18-201ENST00000269137 KIF16BQ96L93 1317 aa18.11■□□□□ 0.49
SS18-201ENST00000269137 ELL2O00472 640 aaPredicted RBP18.11■□□□□ 0.49
SS18-201ENST00000269137 PHKG2P15735 406 aa18.11■□□□□ 0.49
SS18-201ENST00000269137 ZKSCAN2Q63HK3 967 aa18.11■□□□□ 0.49
SS18-201ENST00000269137 IFNL2Q8IZJ0 200 aa18.11■□□□□ 0.49
SS18-201ENST00000269137 VIRMAQ69YN4 1812 aaKnown RBP18.11■□□□□ 0.49
SS18-201ENST00000269137 SOS1Q07889 1333 aaPredicted RBP18.1■□□□□ 0.49
SS18-201ENST00000269137 MS4A1P11836 297 aa18.1■□□□□ 0.49
SS18-201ENST00000269137 TEFQ10587 303 aa18.1■□□□□ 0.49
SS18-201ENST00000269137 IL2RBP14784 551 aa18.09■□□□□ 0.49
SS18-201ENST00000269137 JCADQ9P266 1359 aa18.09■□□□□ 0.49
SS18-201ENST00000269137 IPO8O15397 1037 aaKnown RBP18.09■□□□□ 0.49
SS18-201ENST00000269137 CYP27B1O15528 508 aa18.09■□□□□ 0.49
SS18-201ENST00000269137 HSP90AB1P08238 724 aaKnown RBP18.09■□□□□ 0.49
SS18-201ENST00000269137 MRPL50Q8N5N7 158 aaKnown RBP18.09■□□□□ 0.49
SS18-201ENST00000269137 KRT24Q2M2I5 525 aa18.08■□□□□ 0.48
SS18-201ENST00000269137 SCN11AQ9UI33 1791 aa18.08■□□□□ 0.48
SS18-201ENST00000269137 ADAMTS2O95450 1211 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 ZCRB1Q8TBF4 217 aaKnown RBP18.07■□□□□ 0.48
SS18-201ENST00000269137 NOB1Q9ULX3 412 aaKnown RBP18.07■□□□□ 0.48
SS18-201ENST00000269137 B4GALNT3Q6L9W6 998 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 ATF7IPQ6VMQ6 1270 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 PANK1Q8TE04 598 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 ARHGAP45Q92619 1136 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 DCAF5Q96JK2 942 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 SIPA1L3O60292 1781 aaPredicted RBP18.07■□□□□ 0.48
SS18-201ENST00000269137 KDM3BQ7LBC6 1761 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 KDM6AO15550 1401 aaPredicted RBP18.07■□□□□ 0.48
SS18-201ENST00000269137 PLCH1Q4KWH8 1693 aa18.07■□□□□ 0.48
SS18-201ENST00000269137 PCDH11XQ9BZA7 1347 aa18.06■□□□□ 0.48
SS18-201ENST00000269137 PCDH11YQ9BZA8 1340 aa18.06■□□□□ 0.48
SS18-201ENST00000269137 CCDC136Q96JN2 1154 aa18.06■□□□□ 0.48
SS18-201ENST00000269137 TRIM27P14373 513 aa18.05■□□□□ 0.48
SS18-201ENST00000269137 NUTM2BA6NNL0 878 aaPredicted RBP18.05■□□□□ 0.48
SS18-201ENST00000269137 BTBD11A6QL63 1104 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms