RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 ROBO1Q9Y6N7 1651 aa21.14■□□□□ 0.97
TPM1-201ENST00000267996 GNAT3A8MTJ3 354 aa21.13■□□□□ 0.97
TPM1-201ENST00000267996 PDE3AQ14432 1141 aa21.13■□□□□ 0.97
TPM1-201ENST00000267996 RTF1Q92541 710 aaKnown RBP21.13■□□□□ 0.97
TPM1-201ENST00000267996 LRRC37A3O60309 1634 aa21.13■□□□□ 0.97
TPM1-201ENST00000267996 MAP3K5Q99683 1374 aa21.13■□□□□ 0.97
TPM1-201ENST00000267996 B4GALNT3Q6L9W6 998 aa21.12■□□□□ 0.97
TPM1-201ENST00000267996 FAM208AQ9UK61 1670 aaKnown RBP21.12■□□□□ 0.97
TPM1-201ENST00000267996 VAMP4O75379 141 aa21.1■□□□□ 0.97
TPM1-201ENST00000267996 CHRNA2Q15822 529 aa21.1■□□□□ 0.97
TPM1-201ENST00000267996 ALDH1L2Q3SY69 923 aa21.1■□□□□ 0.97
TPM1-201ENST00000267996 AMOTQ4VCS5 1084 aa21.1■□□□□ 0.97
TPM1-201ENST00000267996 SSH1Q8WYL5 1049 aa21.1■□□□□ 0.97
TPM1-201ENST00000267996 PLEKHO1Q53GL0 409 aaPredicted RBP21.09■□□□□ 0.97
TPM1-201ENST00000267996 PLEKHG2Q9H7P9 1386 aa21.09■□□□□ 0.97
TPM1-201ENST00000267996 BRPF1P55201 1214 aaPredicted RBP21.09■□□□□ 0.97
TPM1-201ENST00000267996 IL17REQ8NFR9 667 aa21.08■□□□□ 0.96
TPM1-201ENST00000267996 BCL2L13Q9BXK5 485 aa21.08■□□□□ 0.96
TPM1-201ENST00000267996 TSPYL6Q8N831 410 aa21.07■□□□□ 0.96
TPM1-201ENST00000267996 CCDC136Q96JN2 1154 aa21.07■□□□□ 0.96
TPM1-201ENST00000267996 PRDM11Q9NQV5 511 aa21.07■□□□□ 0.96
TPM1-201ENST00000267996 SMC4Q9NTJ3 1288 aa21.07■□□□□ 0.96
TPM1-201ENST00000267996 C8orf58Q8NAV2 365 aa21.06■□□□□ 0.96
TPM1-201ENST00000267996 CEMIPQ8WUJ3 1361 aa21.06■□□□□ 0.96
TPM1-201ENST00000267996 BABAM1Q9NWV8 329 aa21.05■□□□□ 0.96
TPM1-201ENST00000267996 NLRP2Q9NX02 1062 aa21.05■□□□□ 0.96
TPM1-201ENST00000267996 CANXP27824 592 aaKnown RBP21.05■□□□□ 0.96
TPM1-201ENST00000267996 TWISTNBQ3B726 338 aaPredicted RBP21.05■□□□□ 0.96
TPM1-201ENST00000267996 AKAP4Q5JQC9 854 aa21.05■□□□□ 0.96
TPM1-201ENST00000267996 PELP1Q8IZL8 1130 aaKnown RBP21.05■□□□□ 0.96
TPM1-201ENST00000267996 FRAT1Q92837 279 aaPredicted RBP21.05■□□□□ 0.96
TPM1-201ENST00000267996 COL22A1Q8NFW1 1626 aaPredicted RBP21.04■□□□□ 0.96
TPM1-201ENST00000267996 ZKSCAN2Q63HK3 967 aa21.03■□□□□ 0.96
TPM1-201ENST00000267996 ZNF530Q6P9A1 599 aaPredicted RBP21.03■□□□□ 0.96
TPM1-201ENST00000267996 OVOS2A0A0G2JMS6 1433 aa21.02■□□□□ 0.96
TPM1-201ENST00000267996 CSB-PGBD3P0DP91 1061 aa21.02■□□□□ 0.96
TPM1-201ENST00000267996 HAP1P54257 671 aaPredicted RBP21.02■□□□□ 0.96
TPM1-201ENST00000267996 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.02■□□□□ 0.965e-8■■■■□ 19.9
TPM1-201ENST00000267996 COL5A2P05997 1499 aaPredicted RBP21.02■□□□□ 0.96
TPM1-201ENST00000267996 PANK1Q8TE04 598 aa21.02■□□□□ 0.95
TPM1-201ENST00000267996 TSPYL4Q9UJ04 414 aa21.02■□□□□ 0.95
TPM1-201ENST00000267996 WDR17Q8IZU2 1322 aa21.01■□□□□ 0.95
TPM1-201ENST00000267996 KIF16BQ96L93 1317 aa21.01■□□□□ 0.95
TPM1-201ENST00000267996 TAF7Q15545 349 aaPredicted RBP21.01■□□□□ 0.95
TPM1-201ENST00000267996 RAPGEF4Q8WZA2 1011 aa21.01■□□□□ 0.95
TPM1-201ENST00000267996 MEGF6O75095 1541 aa21■□□□□ 0.95
TPM1-201ENST00000267996 TOM1O60784 492 aa21■□□□□ 0.95
TPM1-201ENST00000267996 MS4A1P11836 297 aa21■□□□□ 0.95
TPM1-201ENST00000267996 RLBP1P12271 317 aa21■□□□□ 0.95
TPM1-201ENST00000267996 MRPL50Q8N5N7 158 aaKnown RBP21■□□□□ 0.95
TPM1-201ENST00000267996 ELL2O00472 640 aaPredicted RBP20.99■□□□□ 0.95
TPM1-201ENST00000267996 TATP17735 454 aaPredicted RBP20.99■□□□□ 0.95
TPM1-201ENST00000267996 MIS18AQ9NYP9 233 aa20.99■□□□□ 0.95
TPM1-201ENST00000267996 TNNQ9UQP3 1299 aa20.99■□□□□ 0.95
TPM1-201ENST00000267996 ADAMTS7Q9UKP4 1686 aa20.99■□□□□ 0.95
TPM1-201ENST00000267996 COL16A1Q07092 1604 aaPredicted RBP20.99■□□□□ 0.95
TPM1-201ENST00000267996 C1orf141Q5JVX7 400 aa20.99■□□□□ 0.95
TPM1-201ENST00000267996 ATF7IPQ6VMQ6 1270 aa20.99■□□□□ 0.95
TPM1-201ENST00000267996 NOB1Q9ULX3 412 aaKnown RBP20.99■□□□□ 0.95
TPM1-201ENST00000267996 IPO8O15397 1037 aaKnown RBP20.98■□□□□ 0.95
TPM1-201ENST00000267996 LGR6Q9HBX8 967 aa20.98■□□□□ 0.95
TPM1-201ENST00000267996 TRIM27P14373 513 aa20.97■□□□□ 0.95
TPM1-201ENST00000267996 KRT24Q2M2I5 525 aa20.97■□□□□ 0.95
TPM1-201ENST00000267996 DZIP1LQ8IYY4 767 aaKnown RBP20.97■□□□□ 0.95
TPM1-201ENST00000267996 COG6Q9Y2V7 657 aa20.97■□□□□ 0.95
TPM1-201ENST00000267996 RNMTO43148 476 aaKnown RBP20.96■□□□□ 0.95
TPM1-201ENST00000267996 PHLPP1O60346 1717 aa20.96■□□□□ 0.95
TPM1-201ENST00000267996 AAMPQ13685 434 aa20.96■□□□□ 0.95
TPM1-201ENST00000267996 PKD1L3Q7Z443 1732 aa20.96■□□□□ 0.95
TPM1-201ENST00000267996 ARHGAP45Q92619 1136 aa20.96■□□□□ 0.95
TPM1-201ENST00000267996 SOS1Q07889 1333 aaPredicted RBP20.96■□□□□ 0.95
TPM1-201ENST00000267996 CARD10Q9BWT7 1032 aa20.96■□□□□ 0.95
TPM1-201ENST00000267996 SPG7Q9UQ90 795 aa20.96■□□□□ 0.95
TPM1-201ENST00000267996 VIRMAQ69YN4 1812 aaKnown RBP20.94■□□□□ 0.94
TPM1-201ENST00000267996 MPRIPQ6WCQ1 1025 aa20.94■□□□□ 0.94
TPM1-201ENST00000267996 COL14A1Q05707 1796 aaKnown RBP20.94■□□□□ 0.94
TPM1-201ENST00000267996 MVPQ14764 893 aaKnown RBP20.93■□□□□ 0.94
TPM1-201ENST00000267996 TOM1L2Q6ZVM7 507 aa20.93■□□□□ 0.94
TPM1-201ENST00000267996 CLUAP1Q96AJ1 413 aa20.93■□□□□ 0.94
TPM1-201ENST00000267996 FTSJ3Q8IY81 847 aaKnown RBP20.93■□□□□ 0.94
TPM1-201ENST00000267996 KDM3BQ7LBC6 1761 aa20.93■□□□□ 0.94
TPM1-201ENST00000267996 PHKG2P15735 406 aa20.92■□□□□ 0.94
TPM1-201ENST00000267996 SIPA1L3O60292 1781 aaPredicted RBP20.91■□□□□ 0.94
TPM1-201ENST00000267996 PARP4Q9UKK3 1724 aaKnown RBP20.91■□□□□ 0.94
TPM1-201ENST00000267996 TEFQ10587 303 aa20.91■□□□□ 0.94
TPM1-201ENST00000267996 LARP1Q6PKG0 1096 aaKnown RBP20.9■□□□□ 0.94
TPM1-201ENST00000267996 IFNL2Q8IZJ0 200 aa20.9■□□□□ 0.94
TPM1-201ENST00000267996 SCN11AQ9UI33 1791 aa20.9■□□□□ 0.94
TPM1-201ENST00000267996 KDM2BQ8NHM5 1336 aa20.9■□□□□ 0.94
TPM1-201ENST00000267996 KDM6AO15550 1401 aaPredicted RBP20.9■□□□□ 0.94
TPM1-201ENST00000267996 TCERG1O14776 1098 aaKnown RBP20.89■□□□□ 0.94
TPM1-201ENST00000267996 EVA1CP58658 441 aa20.89■□□□□ 0.94
TPM1-201ENST00000267996 PIP4K2BP78356 416 aa20.89■□□□□ 0.93
TPM1-201ENST00000267996 UBAP1LF5GYI3 381 aa20.88■□□□□ 0.93
TPM1-201ENST00000267996 CYP27B1O15528 508 aa20.88■□□□□ 0.93
TPM1-201ENST00000267996 EIF4A1P60842 406 aaKnown RBP20.88■□□□□ 0.93
TPM1-201ENST00000267996 AEBP2Q6ZN18 517 aaPredicted RBP20.88■□□□□ 0.93
TPM1-201ENST00000267996 STRN4Q9NRL3 753 aa20.88■□□□□ 0.93
TPM1-201ENST00000267996 BTG4Q9NY30 223 aa20.88■□□□□ 0.93
TPM1-201ENST00000267996 TMEM57Q8N5G2 664 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms