RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 RAPGEF4Q8WZA2 1011 aa22.11■■□□□ 1.13
USE1-201ENST00000263897 NHSQ6T4R5 1651 aa22.11■■□□□ 1.13
USE1-201ENST00000263897 LRP5O75197 1615 aa22.1■■□□□ 1.13
USE1-201ENST00000263897 MEGF6O75095 1541 aa22.1■■□□□ 1.13
USE1-201ENST00000263897 TATP17735 454 aaPredicted RBP22.09■■□□□ 1.13
USE1-201ENST00000263897 TNNT2P45379 298 aaPredicted RBP22.09■■□□□ 1.13
USE1-201ENST00000263897 ANO8Q9HCE9 1232 aaPredicted RBP22.07■■□□□ 1.12
USE1-201ENST00000263897 KIF7Q2M1P5 1343 aa22.06■■□□□ 1.12
USE1-201ENST00000263897 PRIM1P49642 420 aaKnown RBP22.06■■□□□ 1.12
USE1-201ENST00000263897 KNSTRNQ9Y448 316 aa22.06■■□□□ 1.12
USE1-201ENST00000263897 ANKRD26Q9UPS8 1709 aa22.06■■□□□ 1.12
USE1-201ENST00000263897 BTAF1O14981 1849 aa22.05■■□□□ 1.12
USE1-201ENST00000263897 NSD2O96028 1365 aa22.04■■□□□ 1.12
USE1-201ENST00000263897 EYA1Q99502 592 aa22.04■■□□□ 1.12
USE1-201ENST00000263897 SHANK3Q9BYB0 1731 aa22.03■■□□□ 1.12
USE1-201ENST00000263897 MORC1Q86VD1 984 aa22.03■■□□□ 1.12
USE1-201ENST00000263897 SYTL4Q96C24 671 aaPredicted RBP22.03■■□□□ 1.12
USE1-201ENST00000263897 SLC15A2Q16348 729 aa22.02■■□□□ 1.12
USE1-201ENST00000263897 STK32BQ9NY57 414 aa22.02■■□□□ 1.12
USE1-201ENST00000263897 NCAPD2Q15021 1401 aa22.01■■□□□ 1.11
USE1-201ENST00000263897 EIF4A2Q14240 407 aaKnown RBP22■■□□□ 1.11
USE1-201ENST00000263897 SPON1Q9HCB6 807 aa22■■□□□ 1.11
USE1-201ENST00000263897 PCDH11XQ9BZA7 1347 aa22■■□□□ 1.11
USE1-201ENST00000263897 PCDH11YQ9BZA8 1340 aa22■■□□□ 1.11
USE1-201ENST00000263897 CYP27B1O15528 508 aa21.99■■□□□ 1.11
USE1-201ENST00000263897 LRRC4BQ9NT99 713 aa21.99■■□□□ 1.11
USE1-201ENST00000263897 AMER1Q5JTC6 1135 aaPredicted RBP21.98■■□□□ 1.11
USE1-201ENST00000263897 PDGFDQ9GZP0 370 aaPredicted RBP21.98■■□□□ 1.11
USE1-201ENST00000263897 PER1O15534 1290 aaPredicted RBP21.97■■□□□ 1.11
USE1-201ENST00000263897 SLC27A3Q5K4L6 730 aa21.97■■□□□ 1.11
USE1-201ENST00000263897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.97■■□□□ 1.11
USE1-201ENST00000263897 SPG7Q9UQ90 795 aa21.97■■□□□ 1.11
USE1-201ENST00000263897 DOT1LQ8TEK3 1739 aa21.97■■□□□ 1.11
USE1-201ENST00000263897 NKX1-1Q15270 411 aaPredicted RBP21.93■■□□□ 1.1
USE1-201ENST00000263897 CASZ1Q86V15 1759 aa21.92■■□□□ 1.1
USE1-201ENST00000263897 PKD1L3Q7Z443 1732 aa21.92■■□□□ 1.1
USE1-201ENST00000263897 IGSF1Q8N6C5 1336 aa21.92■■□□□ 1.1
USE1-201ENST00000263897 KCNQ4P56696 695 aa21.91■■□□□ 1.1
USE1-201ENST00000263897 ZNF827Q17R98 1081 aa21.91■■□□□ 1.1
USE1-201ENST00000263897 MPRIPQ6WCQ1 1025 aa21.91■■□□□ 1.1
USE1-201ENST00000263897 AKT1S1Q96B36 256 aa21.91■■□□□ 1.1
USE1-201ENST00000263897 PAPPAQ13219 1627 aa21.91■■□□□ 1.1
USE1-201ENST00000263897 ZBTB7AO95365 584 aa21.9■■□□□ 1.1
USE1-201ENST00000263897 IFNL2Q8IZJ0 200 aa21.89■■□□□ 1.09
USE1-201ENST00000263897 PPP1R1BQ9UD71 204 aaPredicted RBP21.89■■□□□ 1.09
USE1-201ENST00000263897 LY75O60449 1722 aa21.89■■□□□ 1.09
USE1-201ENST00000263897 CCNL1Q9UK58 526 aaPredicted RBP21.88■■□□□ 1.09
USE1-201ENST00000263897 ATF5Q9Y2D1 282 aaPredicted RBP21.88■■□□□ 1.09
USE1-201ENST00000263897 PLEKHG2Q9H7P9 1386 aa21.87■■□□□ 1.09
USE1-201ENST00000263897 PHKG2P15735 406 aa21.87■■□□□ 1.09
USE1-201ENST00000263897 ITGB4P16144 1822 aa21.86■■□□□ 1.09
USE1-201ENST00000263897 PTGER2P43116 358 aa21.86■■□□□ 1.09
USE1-201ENST00000263897 MTHFSP49914 203 aa21.86■■□□□ 1.09
USE1-201ENST00000263897 CC2D1BQ5T0F9 858 aaKnown RBP21.86■■□□□ 1.09
USE1-201ENST00000263897 PIGBQ92521 554 aa21.86■■□□□ 1.09
USE1-201ENST00000263897 MTFR1LQ9H019 292 aa21.86■■□□□ 1.09
USE1-201ENST00000263897 IL13P35225 146 aa21.85■■□□□ 1.09
USE1-201ENST00000263897 PLEKHO1Q53GL0 409 aaPredicted RBP21.85■■□□□ 1.09
USE1-201ENST00000263897 SMARCC1Q92922 1105 aaPredicted RBP21.84■■□□□ 1.09
USE1-201ENST00000263897 TFCP2L1Q9NZI6 479 aa21.84■■□□□ 1.09
USE1-201ENST00000263897 TOGARAM1Q9Y4F4 1720 aa21.83■■□□□ 1.09
USE1-201ENST00000263897 AEBP1Q8IUX7 1158 aa21.83■■□□□ 1.09
USE1-201ENST00000263897 NPC1L1Q9UHC9 1359 aa21.83■■□□□ 1.08
USE1-201ENST00000263897 HMGB2P26583 209 aaKnown RBP21.82■■□□□ 1.08
USE1-201ENST00000263897 AMOTQ4VCS5 1084 aa21.82■■□□□ 1.08
USE1-201ENST00000263897 SULT6B1Q6IMI4 303 aa21.82■■□□□ 1.08
USE1-201ENST00000263897 SLC16A10Q8TF71 515 aa21.82■■□□□ 1.08
USE1-201ENST00000263897 PALLDQ8WX93 1383 aa21.82■■□□□ 1.08
USE1-201ENST00000263897 PNPLA7Q6ZV29 1317 aa21.81■■□□□ 1.08
USE1-201ENST00000263897 SGIP1Q9BQI5 828 aa21.81■■□□□ 1.08
USE1-201ENST00000263897 TMOD3Q9NYL9 352 aa21.81■■□□□ 1.08
USE1-201ENST00000263897 HSP90AB1P08238 724 aaKnown RBP21.79■■□□□ 1.08
USE1-201ENST00000263897 QSER1Q2KHR3 1735 aa21.78■■□□□ 1.08
USE1-201ENST00000263897 KDRP35968 1356 aa21.78■■□□□ 1.08
USE1-201ENST00000263897 ERVV-2B6SEH9 535 aa21.78■■□□□ 1.08
USE1-201ENST00000263897 CNGB1Q14028 1251 aaPredicted RBP21.78■■□□□ 1.08
USE1-201ENST00000263897 ZNF530Q6P9A1 599 aaPredicted RBP21.78■■□□□ 1.08
USE1-201ENST00000263897 DCAF5Q96JK2 942 aa21.78■■□□□ 1.08
USE1-201ENST00000263897 ASAP1Q9ULH1 1129 aa21.77■■□□□ 1.08
USE1-201ENST00000263897 DIAPH1O60610 1272 aaKnown RBP21.76■■□□□ 1.07
USE1-201ENST00000263897 COL23A1Q86Y22 540 aaPredicted RBP21.75■■□□□ 1.07
USE1-201ENST00000263897 ARXQ96QS3 562 aa21.75■■□□□ 1.07
USE1-201ENST00000263897 ATG3Q9NT62 314 aa21.75■■□□□ 1.07
USE1-201ENST00000263897 TUBGCP6Q96RT7 1819 aa21.75■■□□□ 1.07
USE1-201ENST00000263897 TAF1LQ8IZX4 1826 aa21.74■■□□□ 1.07
USE1-201ENST00000263897 LOC102724428A0A0B4J2F2 783 aa21.74■■□□□ 1.07
USE1-201ENST00000263897 SIK1P57059 783 aa21.74■■□□□ 1.07
USE1-201ENST00000263897 C1orf141Q5JVX7 400 aa21.74■■□□□ 1.07
USE1-201ENST00000263897 C5P01031 1676 aa21.73■■□□□ 1.07
USE1-201ENST00000263897 MSH5O43196 834 aa21.72■■□□□ 1.07
USE1-201ENST00000263897 HMOX1P09601 288 aa21.72■■□□□ 1.07
USE1-201ENST00000263897 SYT17Q9BSW7 474 aa21.72■■□□□ 1.07
USE1-201ENST00000263897 FHDC1Q9C0D6 1143 aaPredicted RBP21.72■■□□□ 1.07
USE1-201ENST00000263897 CABP4P57796 275 aa21.71■■□□□ 1.07
USE1-201ENST00000263897 FLAD1Q8NFF5 587 aa21.71■■□□□ 1.07
USE1-201ENST00000263897 KDM6AO15550 1401 aaPredicted RBP21.71■■□□□ 1.07
USE1-201ENST00000263897 DCAF8L1A6NGE4 600 aa21.7■■□□□ 1.06
USE1-201ENST00000263897 POLD1P28340 1107 aa21.7■■□□□ 1.06
USE1-201ENST00000263897 ATP6V1AP38606 617 aa21.7■■□□□ 1.06
USE1-201ENST00000263897 AK7Q96M32 723 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms