RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 GNAT3A8MTJ3 354 aa11.34□□□□□ -0.59
CKAP2-201ENST00000258607 GCP02774 474 aa11.34□□□□□ -0.59
CKAP2-201ENST00000258607 HSP90AB1P08238 724 aaKnown RBP11.34□□□□□ -0.59
CKAP2-201ENST00000258607 NCLP19338 710 aaKnown RBP11.34□□□□□ -0.59
CKAP2-201ENST00000258607 IFT57Q9NWB7 429 aa11.34□□□□□ -0.59
CKAP2-201ENST00000258607 SIRT2Q8IXJ6 389 aa11.34□□□□□ -0.59
CKAP2-201ENST00000258607 CHPF2Q9P2E5 772 aa11.34□□□□□ -0.59
CKAP2-201ENST00000258607 TBX22Q9Y458 520 aa11.34□□□□□ -0.59
CKAP2-201ENST00000258607 EDC4Q6P2E9 1401 aaKnown RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 ANKRD24Q8TF21 1146 aa11.33□□□□□ -0.6
CKAP2-201ENST00000258607 LRRFIP2Q9Y608 721 aaKnown RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 NSD2O96028 1365 aa11.33□□□□□ -0.6
CKAP2-201ENST00000258607 ARHGEF28Q8N1W1 1705 aaKnown RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 ZC3H13Q5T200 1668 aaKnown RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 BTBD11A6QL63 1104 aa11.33□□□□□ -0.6
CKAP2-201ENST00000258607 CHAMP1Q96JM3 812 aa11.33□□□□□ -0.6
CKAP2-201ENST00000258607 ZBTB7BO15156 539 aaPredicted RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 TAF7Q15545 349 aaPredicted RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 CWF19L2Q2TBE0 894 aaKnown RBP11.33□□□□□ -0.6
CKAP2-201ENST00000258607 KLHDC4Q8TBB5 520 aa11.33□□□□□ -0.6
CKAP2-201ENST00000258607 ADAMTS13Q76LX8 1427 aa11.32□□□□□ -0.6
CKAP2-201ENST00000258607 PI4KAP2A4QPH2 592 aa11.32□□□□□ -0.6
CKAP2-201ENST00000258607 CCDC27Q2M243 656 aa11.32□□□□□ -0.6
CKAP2-201ENST00000258607 PI4KAP1Q8N8J0 262 aa11.32□□□□□ -0.6
CKAP2-201ENST00000258607 PPP6R1Q9UPN7 881 aa11.32□□□□□ -0.6
CKAP2-201ENST00000258607 NUTM2BA6NNL0 878 aaPredicted RBP11.32□□□□□ -0.6
CKAP2-201ENST00000258607 NUTM2EB1AL46 878 aaPredicted RBP11.32□□□□□ -0.6
CKAP2-201ENST00000258607 FLIIQ13045 1269 aa11.32□□□□□ -0.6
CKAP2-201ENST00000258607 NUTM2AQ8IVF1 878 aaPredicted RBP11.32□□□□□ -0.6
CKAP2-201ENST00000258607 ATP5J2-PTCD1G3V325 749 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 SURF6O75683 361 aaKnown RBP11.31□□□□□ -0.6
CKAP2-201ENST00000258607 PIP4K2BP78356 416 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 RAPGEF4Q8WZA2 1011 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 PHF23Q9BUL5 403 aaPredicted RBP11.31□□□□□ -0.6
CKAP2-201ENST00000258607 API5Q9BZZ5 524 aaKnown RBP11.31□□□□□ -0.6
CKAP2-201ENST00000258607 MYO3AQ8NEV4 1616 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 LRRC7Q96NW7 1537 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 BECN1Q14457 450 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 PROSER3Q2NL68 480 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 PA2G4Q9UQ80 394 aaKnown RBP11.31□□□□□ -0.6
CKAP2-201ENST00000258607 NDUFB9Q9Y6M9 179 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 MSH6P52701 1360 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 IL27Q8NEV9 243 aa11.31□□□□□ -0.6
CKAP2-201ENST00000258607 C9orf78Q9NZ63 289 aaPredicted RBP11.31□□□□□ -0.6
CKAP2-201ENST00000258607 MAP2P11137 1827 aaKnown RBP11.3□□□□□ -0.6
CKAP2-201ENST00000258607 PNMA6EA0A0J9YXQ4 647 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 PPFIA3O75145 1194 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 NFATC2IPQ8NCF5 419 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 ADAMTS2O95450 1211 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 TOM1L2Q6ZVM7 507 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 TBC1D2Q9BYX2 928 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 PRDM11Q9NQV5 511 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 LAMC1P11047 1609 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 GAS2L2Q8NHY3 880 aa11.3□□□□□ -0.6
CKAP2-201ENST00000258607 PLEKHG3A1L390 1219 aa11.29□□□□□ -0.6
CKAP2-201ENST00000258607 EVA1CP58658 441 aa11.29□□□□□ -0.6
CKAP2-201ENST00000258607 ZFYVE9O95405 1425 aa11.29□□□□□ -0.6
CKAP2-201ENST00000258607 USP6P35125 1406 aa11.29□□□□□ -0.6
CKAP2-201ENST00000258607 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.29□□□□□ -0.6
CKAP2-201ENST00000258607 HSCBQ8IWL3 235 aa11.29□□□□□ -0.6
CKAP2-201ENST00000258607 BRPF3Q9ULD4 1205 aa11.29□□□□□ -0.6
CKAP2-201ENST00000258607 SRGAP3O43295 1099 aa11.28□□□□□ -0.6
CKAP2-201ENST00000258607 NBPF7P0C2Y1 421 aaPredicted RBP11.28□□□□□ -0.6
CKAP2-201ENST00000258607 UBTFL1P0CB47 393 aaPredicted RBP11.28□□□□□ -0.6
CKAP2-201ENST00000258607 ANO2Q9NQ90 1003 aa11.28□□□□□ -0.6
CKAP2-201ENST00000258607 TBC1D9Q6ZT07 1266 aa11.28□□□□□ -0.6
CKAP2-201ENST00000258607 UPF3BQ9BZI7 483 aaKnown RBP11.28□□□□□ -0.6
CKAP2-201ENST00000258607 USP19O94966 1318 aa11.28□□□□□ -0.6
CKAP2-201ENST00000258607 SETBP1Q9Y6X0 1596 aa11.27□□□□□ -0.61
CKAP2-201ENST00000258607 ATP7BP35670 1465 aa11.27□□□□□ -0.61
CKAP2-201ENST00000258607 FLT4P35916 1363 aa11.27□□□□□ -0.61
CKAP2-201ENST00000258607 NINLQ9Y2I6 1382 aa11.27□□□□□ -0.61
CKAP2-201ENST00000258607 CHL1O00533 1208 aa11.27□□□□□ -0.61
CKAP2-201ENST00000258607 NLRP1Q9C000 1473 aa11.27□□□□□ -0.61
CKAP2-201ENST00000258607 CD2BP2O95400 341 aaKnown RBP11.27□□□□□ -0.61
CKAP2-201ENST00000258607 RIC3Q7Z5B4 369 aa11.26□□□□□ -0.61
CKAP2-201ENST00000258607 CCDC30Q5VVM6 783 aa11.26□□□□□ -0.61
CKAP2-201ENST00000258607 PUS7Q96PZ0 661 aaKnown RBP11.25□□□□□ -0.61
CKAP2-201ENST00000258607 FAM135BQ49AJ0 1406 aa11.25□□□□□ -0.61
CKAP2-201ENST00000258607 PLEKHG1Q9ULL1 1385 aa11.25□□□□□ -0.61
CKAP2-201ENST00000258607 ALDH1L2Q3SY69 923 aa11.25□□□□□ -0.61
CKAP2-201ENST00000258607 NAP1L2Q9ULW6 460 aaPredicted RBP11.25□□□□□ -0.61
CKAP2-201ENST00000258607 ZNF335Q9H4Z2 1342 aaPredicted RBP11.25□□□□□ -0.61
CKAP2-201ENST00000258607 IFT172Q9UG01 1749 aa11.25□□□□□ -0.61
CKAP2-201ENST00000258607 CEP85Q6P2H3 762 aa11.25□□□□□ -0.61
CKAP2-201ENST00000258607 CPSF1Q10570 1443 aaKnown RBP11.25□□□□□ -0.61
CKAP2-201ENST00000258607 NUCB1Q02818 461 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 CCDC8Q9H0W5 538 aaPredicted RBP11.24□□□□□ -0.61
CKAP2-201ENST00000258607 ZBTB3Q9H5J0 574 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 KDM4AO75164 1064 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 KCNQ4P56696 695 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 MAP3K2Q9Y2U5 619 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 GNAI2P04899 355 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 GSPT1P15170 499 aaKnown RBP11.24□□□□□ -0.61
CKAP2-201ENST00000258607 KCNJ4P48050 445 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 TTC5Q8N0Z6 440 aa11.24□□□□□ -0.61
CKAP2-201ENST00000258607 FOSBP53539 338 aa11.23□□□□□ -0.61
CKAP2-201ENST00000258607 PLEKHO1Q53GL0 409 aaPredicted RBP11.23□□□□□ -0.61
CKAP2-201ENST00000258607 PPP1R42Q7Z4L9 355 aa11.23□□□□□ -0.61
CKAP2-201ENST00000258607 TCEANC2Q96MN5 208 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms