RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 ELL2O00472 640 aaPredicted RBP29.6■■■□□ 2.33
MSX2-201ENST00000239243 KRT28Q7Z3Y7 464 aa29.6■■■□□ 2.33
MSX2-201ENST00000239243 SKAP1Q86WV1 359 aa29.6■■■□□ 2.33
MSX2-201ENST00000239243 LTV1Q96GA3 475 aaPredicted RBP29.59■■■□□ 2.33
MSX2-201ENST00000239243 ANP32AP39687 249 aaKnown RBP29.59■■■□□ 2.33
MSX2-201ENST00000239243 USP19O94966 1318 aa29.58■■■□□ 2.33
MSX2-201ENST00000239243 GCP02774 474 aa29.57■■■□□ 2.32
MSX2-201ENST00000239243 LRRC37A3O60309 1634 aa29.57■■■□□ 2.32
MSX2-201ENST00000239243 GNAT3A8MTJ3 354 aa29.56■■■□□ 2.32
MSX2-201ENST00000239243 XPCQ01831 940 aaPredicted RBP29.56■■■□□ 2.32
MSX2-201ENST00000239243 API5Q9BZZ5 524 aaKnown RBP29.56■■■□□ 2.32
MSX2-201ENST00000239243 RGS3P49796 1198 aa29.55■■■□□ 2.32
MSX2-201ENST00000239243 CADPS2Q86UW7 1296 aa29.55■■■□□ 2.32
MSX2-201ENST00000239243 ARHGEF25Q86VW2 580 aa29.54■■■□□ 2.32
MSX2-201ENST00000239243 ZBTB40Q9NUA8 1239 aa29.54■■■□□ 2.32
MSX2-201ENST00000239243 MAP3K5Q99683 1374 aa29.54■■■□□ 2.32
MSX2-201ENST00000239243 HSPA2P54652 639 aa29.53■■■□□ 2.32
MSX2-201ENST00000239243 HDAC1Q13547 482 aaPredicted RBP29.53■■■□□ 2.32
MSX2-201ENST00000239243 LMOD2Q6P5Q4 547 aa29.53■■■□□ 2.32
MSX2-201ENST00000239243 ALS2Q96Q42 1657 aa29.53■■■□□ 2.32
MSX2-201ENST00000239243 FAM161AQ3B820 660 aa29.52■■■□□ 2.32
MSX2-201ENST00000239243 TSPYL4Q9UJ04 414 aa29.52■■■□□ 2.32
MSX2-201ENST00000239243 ABCC4O15439 1325 aa29.52■■■□□ 2.32
MSX2-201ENST00000239243 MSH6P52701 1360 aa29.51■■■□□ 2.31
MSX2-201ENST00000239243 ZBTB7CA1YPR0 619 aa29.49■■■□□ 2.31
MSX2-201ENST00000239243 BABAM1Q9NWV8 329 aa29.49■■■□□ 2.31
MSX2-201ENST00000239243 NBPF6Q5VWK0 638 aa29.48■■■□□ 2.31
MSX2-201ENST00000239243 NBPF4Q96M43 638 aa29.48■■■□□ 2.31
MSX2-201ENST00000239243 LMTK3Q96Q04 1460 aa29.48■■■□□ 2.31
MSX2-201ENST00000239243 USHBP1Q8N6Y0 703 aa29.47■■■□□ 2.31
MSX2-201ENST00000239243 NPHP3Q7Z494 1330 aa29.46■■■□□ 2.31
MSX2-201ENST00000239243 NCAPD2Q15021 1401 aa29.46■■■□□ 2.31
MSX2-201ENST00000239243 PTPRCP08575 1304 aa29.45■■■□□ 2.3
MSX2-201ENST00000239243 SOS1Q07889 1333 aaPredicted RBP29.45■■■□□ 2.3
MSX2-201ENST00000239243 ZBTB7BO15156 539 aaPredicted RBP29.44■■■□□ 2.3
MSX2-201ENST00000239243 MSH5O43196 834 aa29.44■■■□□ 2.3
MSX2-201ENST00000239243 KRT24Q2M2I5 525 aa29.44■■■□□ 2.3
MSX2-201ENST00000239243 PDZRN3Q9UPQ7 1066 aa29.44■■■□□ 2.3
MSX2-201ENST00000239243 CAMTA1Q9Y6Y1 1673 aa29.42■■■□□ 2.3
MSX2-201ENST00000239243 KDM4FA0A1W2PPD8 638 aa29.42■■■□□ 2.3
MSX2-201ENST00000239243 C8orf34Q49A92 452 aa29.42■■■□□ 2.3
MSX2-201ENST00000239243 RGPD2P0DJD1 1756 aa29.42■■■□□ 2.3
MSX2-201ENST00000239243 STRCQ7RTU9 1775 aa29.41■■■□□ 2.3
MSX2-201ENST00000239243 MIS18AQ9NYP9 233 aa29.41■■■□□ 2.3
MSX2-201ENST00000239243 TAF7Q15545 349 aaPredicted RBP29.41■■■□□ 2.3
MSX2-201ENST00000239243 IL17REQ8NFR9 667 aa29.41■■■□□ 2.3
MSX2-201ENST00000239243 ANKRD24Q8TF21 1146 aa29.41■■■□□ 2.3
MSX2-201ENST00000239243 IPO9Q96P70 1041 aaKnown RBP29.41■■■□□ 2.3
MSX2-201ENST00000239243 MED1Q15648 1581 aaPredicted RBP29.41■■■□□ 2.3
MSX2-201ENST00000239243 AMOTQ4VCS5 1084 aa29.4■■■□□ 2.3
MSX2-201ENST00000239243 PLEKHO1Q53GL0 409 aaPredicted RBP29.39■■■□□ 2.3
MSX2-201ENST00000239243 SMC5Q8IY18 1101 aa29.39■■■□□ 2.3
MSX2-201ENST00000239243 XIRP1Q702N8 1843 aaKnown RBP29.38■■■□□ 2.29
MSX2-201ENST00000239243 TNS3Q68CZ2 1445 aa29.38■■■□□ 2.29
MSX2-201ENST00000239243 VIRMAQ69YN4 1812 aaKnown RBP29.38■■■□□ 2.29
MSX2-201ENST00000239243 LRRC59Q96AG4 307 aaKnown RBP29.38■■■□□ 2.29
MSX2-201ENST00000239243 CEMIPQ8WUJ3 1361 aa29.38■■■□□ 2.29
MSX2-201ENST00000239243 INTS3Q68E01 1043 aaKnown RBP29.37■■■□□ 2.29
MSX2-201ENST00000239243 LMO7Q8WWI1 1683 aa29.37■■■□□ 2.29
MSX2-201ENST00000239243 ERICH6Q7L0X2 663 aa29.36■■■□□ 2.29
MSX2-201ENST00000239243 NPM2Q86SE8 214 aaKnown RBP29.36■■■□□ 2.29
MSX2-201ENST00000239243 PLEKHG5O94827 1062 aa29.35■■■□□ 2.29
MSX2-201ENST00000239243 AKAP4Q5JQC9 854 aa29.35■■■□□ 2.29
MSX2-201ENST00000239243 RGS12O14924 1447 aa29.35■■■□□ 2.29
MSX2-201ENST00000239243 SLC4A2P04920 1241 aa29.35■■■□□ 2.29
MSX2-201ENST00000239243 PXDNQ92626 1479 aa29.34■■■□□ 2.29
MSX2-201ENST00000239243 ABCC6O95255 1503 aa29.34■■■□□ 2.29
MSX2-201ENST00000239243 STK31Q9BXU1 1019 aa29.34■■■□□ 2.29
MSX2-201ENST00000239243 ERBB3P21860 1342 aa29.32■■■□□ 2.28
MSX2-201ENST00000239243 CCDC30Q5VVM6 783 aa29.32■■■□□ 2.28
MSX2-201ENST00000239243 ZNF530Q6P9A1 599 aaPredicted RBP29.32■■■□□ 2.28
MSX2-201ENST00000239243 AXIN2Q9Y2T1 843 aa29.32■■■□□ 2.28
MSX2-201ENST00000239243 OVOS2A0A0G2JMS6 1433 aa29.31■■■□□ 2.28
MSX2-201ENST00000239243 ZC3H6P61129 1189 aaKnown RBP29.3■■■□□ 2.28
MSX2-201ENST00000239243 DDX17Q92841 729 aaKnown RBP29.3■■■□□ 2.28
MSX2-201ENST00000239243 GCC1Q96CN9 775 aa29.3■■■□□ 2.28
MSX2-201ENST00000239243 FAM208AQ9UK61 1670 aaKnown RBP29.3■■■□□ 2.28
MSX2-201ENST00000239243 RGPD5Q99666 1765 aa29.3■■■□□ 2.28
MSX2-201ENST00000239243 SPATA31A3Q5VYP0 1347 aa29.3■■■□□ 2.28
MSX2-201ENST00000239243 C1orf141Q5JVX7 400 aa29.29■■■□□ 2.28
MSX2-201ENST00000239243 NOP58Q9Y2X3 529 aaKnown RBP29.29■■■□□ 2.28
MSX2-201ENST00000239243 CACNA1FO60840 1977 aa29.29■■■□□ 2.28
MSX2-201ENST00000239243 CHMP4AQ9BY43 222 aa29.29■■■□□ 2.28
MSX2-201ENST00000239243 DDRGK1Q96HY6 314 aa29.26■■■□□ 2.27
MSX2-201ENST00000239243 ZBTB47Q9UFB7 747 aaPredicted RBP29.26■■■□□ 2.27
MSX2-201ENST00000239243 CRYBG1Q9Y4K1 1723 aa29.26■■■□□ 2.27
MSX2-201ENST00000239243 KDM3BQ7LBC6 1761 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 NUCB1Q02818 461 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 TEFQ10587 303 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 BRINP3Q76B58 766 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 ANP32EQ9BTT0 268 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 COL18A1P39060 1754 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 PLEKHG2Q9H7P9 1386 aa29.25■■■□□ 2.27
MSX2-201ENST00000239243 C1orf115Q9H7X2 142 aa29.24■■■□□ 2.27
MSX2-201ENST00000239243 CCT4P50991 539 aaKnown RBP29.24■■■□□ 2.27
MSX2-201ENST00000239243 HOXB7P09629 217 aa29.23■■■□□ 2.27
MSX2-201ENST00000239243 LGR6Q9HBX8 967 aa29.23■■■□□ 2.27
MSX2-201ENST00000239243 CPDO75976 1380 aa29.22■■■□□ 2.27
MSX2-201ENST00000239243 ZNF335Q9H4Z2 1342 aaPredicted RBP29.22■■■□□ 2.27
MSX2-201ENST00000239243 RNMTO43148 476 aaKnown RBP29.2■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms