RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 KAT6BQ8WYB5 2073 aa17.47■□□□□ 0.39
SLIRP-201ENST00000238688 ANKRD24Q8TF21 1146 aa17.46■□□□□ 0.39
SLIRP-201ENST00000238688 IP6K1Q92551 441 aa17.46■□□□□ 0.39
SLIRP-201ENST00000238688 GTF3C3Q9Y5Q9 886 aa17.46■□□□□ 0.39
SLIRP-201ENST00000238688 NUDCQ9Y266 331 aa17.45■□□□□ 0.38
SLIRP-201ENST00000238688 TNS2Q63HR2 1409 aa17.45■□□□□ 0.38
SLIRP-201ENST00000238688 FAM208AQ9UK61 1670 aaKnown RBP17.45■□□□□ 0.38
SLIRP-201ENST00000238688 MAP3K19Q56UN5 1328 aa17.45■□□□□ 0.38
SLIRP-201ENST00000238688 MTHFSP49914 203 aa17.44■□□□□ 0.38
SLIRP-201ENST00000238688 PNNQ9H307 717 aaKnown RBP17.44■□□□□ 0.38
SLIRP-201ENST00000238688 NLRP2Q9NX02 1062 aa17.44■□□□□ 0.38
SLIRP-201ENST00000238688 ADAMTS8Q9UP79 889 aa17.44■□□□□ 0.38
SLIRP-201ENST00000238688 COL3A1P02461 1466 aaPredicted RBP17.44■□□□□ 0.38
SLIRP-201ENST00000238688 EXOC5O00471 708 aa17.43■□□□□ 0.38
SLIRP-201ENST00000238688 COG3Q96JB2 828 aa17.43■□□□□ 0.38
SLIRP-201ENST00000238688 BCL11BQ9C0K0 894 aaPredicted RBP17.43■□□□□ 0.38
SLIRP-201ENST00000238688 PLSCR1O15162 318 aa17.42■□□□□ 0.38
SLIRP-201ENST00000238688 NEFLP07196 543 aa17.42■□□□□ 0.38
SLIRP-201ENST00000238688 ERICH6BQ5W0A0 696 aa17.42■□□□□ 0.38
SLIRP-201ENST00000238688 PROM2Q8N271 834 aa17.42■□□□□ 0.38
SLIRP-201ENST00000238688 GGNBP2Q9H3C7 697 aa17.42■□□□□ 0.38
SLIRP-201ENST00000238688 NHSQ6T4R5 1651 aa17.42■□□□□ 0.38
SLIRP-201ENST00000238688 HOXC9P31274 260 aa17.41■□□□□ 0.38
SLIRP-201ENST00000238688 SHANK3Q9BYB0 1731 aa17.41■□□□□ 0.38
SLIRP-201ENST00000238688 KIF24Q5T7B8 1368 aa17.4■□□□□ 0.38
SLIRP-201ENST00000238688 IL2RBP14784 551 aa17.4■□□□□ 0.38
SLIRP-201ENST00000238688 KCNQ2O43526 872 aa17.39■□□□□ 0.37
SLIRP-201ENST00000238688 BTAF1O14981 1849 aa17.38■□□□□ 0.37
SLIRP-201ENST00000238688 RRS1Q15050 365 aaKnown RBP17.38■□□□□ 0.37
SLIRP-201ENST00000238688 LTV1Q96GA3 475 aaPredicted RBP17.38■□□□□ 0.37
SLIRP-201ENST00000238688 RUNDC1Q96C34 613 aa17.37■□□□□ 0.37
SLIRP-201ENST00000238688 AMPHP49418 695 aa17.36■□□□□ 0.37
SLIRP-201ENST00000238688 ANO8Q9HCE9 1232 aaPredicted RBP17.36■□□□□ 0.37
SLIRP-201ENST00000238688 RTL1A6NKG5 1358 aa17.36■□□□□ 0.37
SLIRP-201ENST00000238688 CASZ1Q86V15 1759 aa17.35■□□□□ 0.37
SLIRP-201ENST00000238688 DIAPH1O60610 1272 aaKnown RBP17.35■□□□□ 0.37
SLIRP-201ENST00000238688 CCDC27Q2M243 656 aa17.35■□□□□ 0.37
SLIRP-201ENST00000238688 ZNF521Q96K83 1311 aa17.35■□□□□ 0.37
SLIRP-201ENST00000238688 TNNT2P45379 298 aaPredicted RBP17.34■□□□□ 0.37
SLIRP-201ENST00000238688 NBPF14Q5TI25 921 aa17.34■□□□□ 0.37
SLIRP-201ENST00000238688 ACSBG1Q96GR2 724 aa17.34■□□□□ 0.37
SLIRP-201ENST00000238688 MEGF6O75095 1541 aa17.33■□□□□ 0.37
SLIRP-201ENST00000238688 NBPF6Q5VWK0 638 aa17.33■□□□□ 0.36
SLIRP-201ENST00000238688 NBPF4Q96M43 638 aa17.33■□□□□ 0.36
SLIRP-201ENST00000238688 POLKQ9UBT6 870 aa17.33■□□□□ 0.36
SLIRP-201ENST00000238688 TXNRD1Q16881 649 aa17.32■□□□□ 0.36
SLIRP-201ENST00000238688 HSP90AB2PQ58FF8 381 aa17.32■□□□□ 0.36
SLIRP-201ENST00000238688 FCHSD2O94868 740 aa17.31■□□□□ 0.36
SLIRP-201ENST00000238688 PDGFDQ9GZP0 370 aaPredicted RBP17.31■□□□□ 0.36
SLIRP-201ENST00000238688 PAPPAQ13219 1627 aa17.31■□□□□ 0.36
SLIRP-201ENST00000238688 DOT1LQ8TEK3 1739 aa17.3■□□□□ 0.36
SLIRP-201ENST00000238688 RNF123Q5XPI4 1314 aa17.3■□□□□ 0.36
SLIRP-201ENST00000238688 NEFMP07197 916 aa17.29■□□□□ 0.36
SLIRP-201ENST00000238688 GOLGA2Q08379 1002 aa17.29■□□□□ 0.36
SLIRP-201ENST00000238688 USHBP1Q8N6Y0 703 aa17.29■□□□□ 0.36
SLIRP-201ENST00000238688 EMILIN1Q9Y6C2 1016 aa17.29■□□□□ 0.36
SLIRP-201ENST00000238688 FLT4P35916 1363 aa17.28■□□□□ 0.36
SLIRP-201ENST00000238688 U2AF1L5P0DN76 240 aaPredicted RBP17.28■□□□□ 0.36
SLIRP-201ENST00000238688 U2AF1Q01081 240 aaKnown RBP eCLIP17.28■□□□□ 0.36
SLIRP-201ENST00000238688 DDX54Q8TDD1 881 aaKnown RBP17.28■□□□□ 0.36
SLIRP-201ENST00000238688 E9PSI1 815 aa17.27■□□□□ 0.36
SLIRP-201ENST00000238688 WDR63Q8IWG1 891 aa17.27■□□□□ 0.36
SLIRP-201ENST00000238688 MAPK8IP3Q9UPT6 1336 aa17.26■□□□□ 0.35
SLIRP-201ENST00000238688 APAF1O14727 1248 aa17.26■□□□□ 0.35
SLIRP-201ENST00000238688 ZCRB1Q8TBF4 217 aaKnown RBP17.26■□□□□ 0.35
SLIRP-201ENST00000238688 NCAPD2Q15021 1401 aa17.26■□□□□ 0.35
SLIRP-201ENST00000238688 LY75O60449 1722 aa17.26■□□□□ 0.35
SLIRP-201ENST00000238688 LRRC4BQ9NT99 713 aa17.25■□□□□ 0.35
SLIRP-201ENST00000238688 PKD1L3Q7Z443 1732 aa17.24■□□□□ 0.35
SLIRP-201ENST00000238688 SLC15A2Q16348 729 aa17.24■□□□□ 0.35
SLIRP-201ENST00000238688 TRMT2AQ8IZ69 625 aaKnown RBP17.24■□□□□ 0.35
SLIRP-201ENST00000238688 TUBGCP6Q96RT7 1819 aa17.24■□□□□ 0.35
SLIRP-201ENST00000238688 IL16Q14005 1332 aa17.23■□□□□ 0.35
SLIRP-201ENST00000238688 IL13P35225 146 aa17.23■□□□□ 0.35
SLIRP-201ENST00000238688 PLEKHF1Q96S99 279 aa17.23■□□□□ 0.35
SLIRP-201ENST00000238688 SPON1Q9HCB6 807 aa17.23■□□□□ 0.35
SLIRP-201ENST00000238688 SUPT16HQ9Y5B9 1047 aaKnown RBP17.23■□□□□ 0.35
SLIRP-201ENST00000238688 TOGARAM1Q9Y4F4 1720 aa17.22■□□□□ 0.35
SLIRP-201ENST00000238688 ITGB4P16144 1822 aa17.22■□□□□ 0.35
SLIRP-201ENST00000238688 U2SURPO15042 1029 aaKnown RBP17.22■□□□□ 0.35
SLIRP-201ENST00000238688 PRIM1P49642 420 aaKnown RBP17.22■□□□□ 0.35
SLIRP-201ENST00000238688 SLFN5Q08AF3 891 aa17.22■□□□□ 0.35
SLIRP-201ENST00000238688 QSER1Q2KHR3 1735 aa17.21■□□□□ 0.35
SLIRP-201ENST00000238688 CALD1Q05682 793 aaKnown RBP17.21■□□□□ 0.35
SLIRP-201ENST00000238688 WWC1Q8IX03 1113 aa17.21■□□□□ 0.35
SLIRP-201ENST00000238688 CCDC146Q8IYE0 955 aa17.21■□□□□ 0.35
SLIRP-201ENST00000238688 PELP1Q8IZL8 1130 aaKnown RBP17.21■□□□□ 0.35
SLIRP-201ENST00000238688 STK32BQ9NY57 414 aa17.21■□□□□ 0.35
SLIRP-201ENST00000238688 LMOD3Q0VAK6 560 aa17.2■□□□□ 0.34
SLIRP-201ENST00000238688 ZNF827Q17R98 1081 aa17.2■□□□□ 0.34
SLIRP-201ENST00000238688 RAPGEF4Q8WZA2 1011 aa17.2■□□□□ 0.34
SLIRP-201ENST00000238688 RCAN3Q9UKA8 241 aa17.2■□□□□ 0.34
SLIRP-201ENST00000238688 CYP27B1O15528 508 aa17.19■□□□□ 0.34
SLIRP-201ENST00000238688 CT47B1P0C2W7 299 aaPredicted RBP17.19■□□□□ 0.34
SLIRP-201ENST00000238688 TATP17735 454 aaPredicted RBP17.19■□□□□ 0.34
SLIRP-201ENST00000238688 PTGER2P43116 358 aa17.19■□□□□ 0.34
SLIRP-201ENST00000238688 DUSP27Q5VZP5 1158 aa17.19■□□□□ 0.34
SLIRP-201ENST00000238688 RSPH6AQ9H0K4 717 aa17.19■□□□□ 0.34
SLIRP-201ENST00000238688 PPM1GO15355 546 aaPredicted RBP17.18■□□□□ 0.34
SLIRP-201ENST00000238688 ZBTB7AO95365 584 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms