RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 AFF2P51816 1311 aa26.11■■□□□ 1.77
SNX3-201ENST00000230085 COL18A1P39060 1754 aa26.11■■□□□ 1.77
SNX3-201ENST00000230085 CCDC146Q8IYE0 955 aa26.11■■□□□ 1.77
SNX3-201ENST00000230085 SLIT2O94813 1529 aa26.1■■□□□ 1.77
SNX3-201ENST00000230085 CAMTA1Q9Y6Y1 1673 aa26.1■■□□□ 1.77
SNX3-201ENST00000230085 IP6K1Q92551 441 aa26.1■■□□□ 1.77
SNX3-201ENST00000230085 RGPD5Q99666 1765 aa26.09■■□□□ 1.77
SNX3-201ENST00000230085 PLCH1Q4KWH8 1693 aa26.09■■□□□ 1.77
SNX3-201ENST00000230085 HOXC9P31274 260 aa26.09■■□□□ 1.77
SNX3-201ENST00000230085 ANTXR1Q9H6X2 564 aa26.09■■□□□ 1.77
SNX3-201ENST00000230085 LMO7Q8WWI1 1683 aa26.09■■□□□ 1.77
SNX3-201ENST00000230085 USP21Q9UK80 565 aa26.08■■□□□ 1.77
SNX3-201ENST00000230085 PEAK1Q9H792 1746 aa26.08■■□□□ 1.77
SNX3-201ENST00000230085 BCL9LQ86UU0 1499 aa26.07■■□□□ 1.76
SNX3-201ENST00000230085 MTHFSP49914 203 aa26.07■■□□□ 1.76
SNX3-201ENST00000230085 HSP90AB2PQ58FF8 381 aa26.07■■□□□ 1.76
SNX3-201ENST00000230085 RTN4Q9NQC3 1192 aaKnown RBP26.07■■□□□ 1.76
SNX3-201ENST00000230085 RUNDC1Q96C34 613 aa26.06■■□□□ 1.76
SNX3-201ENST00000230085 STRN4Q9NRL3 753 aa26.06■■□□□ 1.76
SNX3-201ENST00000230085 RARSP54136 660 aaKnown RBP26.05■■□□□ 1.76
SNX3-201ENST00000230085 UNC5CLQ8IV45 518 aa26.05■■□□□ 1.76
SNX3-201ENST00000230085 TBC1D32Q96NH3 1257 aa26.05■■□□□ 1.76
SNX3-201ENST00000230085 RGS17Q9UGC6 210 aaPredicted RBP26.05■■□□□ 1.76
SNX3-201ENST00000230085 FLT4P35916 1363 aa26.04■■□□□ 1.76
SNX3-201ENST00000230085 NWD2Q9ULI1 1742 aa26.04■■□□□ 1.76
SNX3-201ENST00000230085 CT47B1P0C2W7 299 aaPredicted RBP26.04■■□□□ 1.76
SNX3-201ENST00000230085 EVA1CP58658 441 aa26.04■■□□□ 1.76
SNX3-201ENST00000230085 RTL1A6NKG5 1358 aa26.04■■□□□ 1.76
SNX3-201ENST00000230085 KIF24Q5T7B8 1368 aa26.03■■□□□ 1.76
SNX3-201ENST00000230085 LTV1Q96GA3 475 aaPredicted RBP26.02■■□□□ 1.76
SNX3-201ENST00000230085 COL5A2P05997 1499 aaPredicted RBP26.02■■□□□ 1.76
SNX3-201ENST00000230085 L1TD1Q5T7N2 865 aaKnown RBP26.02■■□□□ 1.76
SNX3-201ENST00000230085 ABCC6O95255 1503 aa26.02■■□□□ 1.76
SNX3-201ENST00000230085 NRAPQ86VF7 1730 aa26■■□□□ 1.75
SNX3-201ENST00000230085 ERBB3P21860 1342 aa26■■□□□ 1.75
SNX3-201ENST00000230085 LARP1Q6PKG0 1096 aaKnown RBP26■■□□□ 1.75
SNX3-201ENST00000230085 ANKRD24Q8TF21 1146 aa26■■□□□ 1.75
SNX3-201ENST00000230085 UPF2Q9HAU5 1272 aaKnown RBP26■■□□□ 1.75
SNX3-201ENST00000230085 RSPH6AQ9H0K4 717 aa26■■□□□ 1.75
SNX3-201ENST00000230085 ZNF772Q68DY9 489 aaPredicted RBP25.99■■□□□ 1.75
SNX3-201ENST00000230085 SEC24BO95487 1268 aa25.98■■□□□ 1.75
SNX3-201ENST00000230085 QTRT2Q9H974 415 aaKnown RBP25.98■■□□□ 1.75
SNX3-201ENST00000230085 COG6Q9Y2V7 657 aa25.98■■□□□ 1.75
SNX3-201ENST00000230085 CSB-PGBD3P0DP91 1061 aa25.97■■□□□ 1.75
SNX3-201ENST00000230085 PANK1Q8TE04 598 aa25.97■■□□□ 1.75
SNX3-201ENST00000230085 CDK12Q9NYV4 1490 aaPredicted RBP25.97■■□□□ 1.75
SNX3-201ENST00000230085 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.96■■□□□ 1.75
SNX3-201ENST00000230085 WDR17Q8IZU2 1322 aa25.96■■□□□ 1.75
SNX3-201ENST00000230085 RWDD1Q9H446 243 aaPredicted RBP25.96■■□□□ 1.75
SNX3-201ENST00000230085 TRPC5Q9UL62 973 aaPredicted RBP25.96■■□□□ 1.75
SNX3-201ENST00000230085 CCDC9Q9Y3X0 531 aaKnown RBP25.96■■□□□ 1.75
SNX3-201ENST00000230085 CANXP27824 592 aaKnown RBP25.95■■□□□ 1.75
SNX3-201ENST00000230085 VPS72Q15906 364 aa25.95■■□□□ 1.75
SNX3-201ENST00000230085 TOM1L2Q6ZVM7 507 aa25.95■■□□□ 1.75
SNX3-201ENST00000230085 EIF4A2Q14240 407 aaKnown RBP25.95■■□□□ 1.74
SNX3-201ENST00000230085 POTEAQ6S8J7 498 aa25.93■■□□□ 1.74
SNX3-201ENST00000230085 PCDHB15Q9Y5E8 787 aa25.93■■□□□ 1.74
SNX3-201ENST00000230085 ATRNO75882 1429 aa25.93■■□□□ 1.74
SNX3-201ENST00000230085 NLRP2Q9NX02 1062 aa25.92■■□□□ 1.74
SNX3-201ENST00000230085 MYH16Q9H6N6 1097 aa25.92■■□□□ 1.74
SNX3-201ENST00000230085 CRB1P82279 1406 aa25.91■■□□□ 1.74
SNX3-201ENST00000230085 SPATA31A5Q5VU36 1347 aa25.91■■□□□ 1.74
SNX3-201ENST00000230085 SPATA31A7Q8IWB4 1347 aa25.91■■□□□ 1.74
SNX3-201ENST00000230085 TCP11L2Q8N4U5 519 aa25.91■■□□□ 1.74
SNX3-201ENST00000230085 GJD4Q96KN9 370 aaPredicted RBP25.91■■□□□ 1.74
SNX3-201ENST00000230085 RGPD2P0DJD1 1756 aa25.91■■□□□ 1.74
SNX3-201ENST00000230085 NBPF6Q5VWK0 638 aa25.9■■□□□ 1.74
SNX3-201ENST00000230085 NBPF4Q96M43 638 aa25.9■■□□□ 1.74
SNX3-201ENST00000230085 PDZRN3Q9UPQ7 1066 aa25.9■■□□□ 1.74
SNX3-201ENST00000230085 SPATA31A1Q5TZJ5 1347 aa25.9■■□□□ 1.74
SNX3-201ENST00000230085 IL13P35225 146 aa25.89■■□□□ 1.73
SNX3-201ENST00000230085 CFAP53Q96M91 514 aa25.89■■□□□ 1.73
SNX3-201ENST00000230085 TBC1D2Q9BYX2 928 aa25.89■■□□□ 1.73
SNX3-201ENST00000230085 FSD2A1L4K1 749 aa25.88■■□□□ 1.73
SNX3-201ENST00000230085 DIAPH1O60610 1272 aaKnown RBP25.88■■□□□ 1.73
SNX3-201ENST00000230085 CARD10Q9BWT7 1032 aa25.88■■□□□ 1.73
SNX3-201ENST00000230085 COL3A1P02461 1466 aaPredicted RBP25.88■■□□□ 1.73
SNX3-201ENST00000230085 RLBP1P12271 317 aa25.87■■□□□ 1.73
SNX3-201ENST00000230085 MVPQ14764 893 aaKnown RBP25.87■■□□□ 1.73
SNX3-201ENST00000230085 EYA1Q99502 592 aa25.87■■□□□ 1.73
SNX3-201ENST00000230085 HDAC1Q13547 482 aaPredicted RBP25.87■■□□□ 1.73
SNX3-201ENST00000230085 USHBP1Q8N6Y0 703 aa25.87■■□□□ 1.73
SNX3-201ENST00000230085 ISY1Q9ULR0 285 aaKnown RBP25.85■■□□□ 1.73
SNX3-201ENST00000230085 GLI3P10071 1580 aa25.85■■□□□ 1.73
SNX3-201ENST00000230085 FAM208AQ9UK61 1670 aaKnown RBP25.84■■□□□ 1.73
SNX3-201ENST00000230085 RBM6P78332 1123 aaKnown RBP25.84■■□□□ 1.73
SNX3-201ENST00000230085 RXRBP28702 533 aa25.83■■□□□ 1.73
SNX3-201ENST00000230085 FAM98CQ17RN3 349 aaKnown RBP25.83■■□□□ 1.73
SNX3-201ENST00000230085 IL16Q14005 1332 aa25.82■■□□□ 1.72
SNX3-201ENST00000230085 ZKSCAN2Q63HK3 967 aa25.82■■□□□ 1.72
SNX3-201ENST00000230085 THRAP3Q9Y2W1 955 aaKnown RBP25.82■■□□□ 1.72
SNX3-201ENST00000230085 U2SURPO15042 1029 aaKnown RBP25.81■■□□□ 1.72
SNX3-201ENST00000230085 IGSF1Q8N6C5 1336 aa25.8■■□□□ 1.72
SNX3-201ENST00000230085 MCM4P33991 863 aa25.79■■□□□ 1.72
SNX3-201ENST00000230085 CHMP5Q9NZZ3 219 aa25.79■■□□□ 1.72
SNX3-201ENST00000230085 BARGINQ6ZT62 677 aa25.79■■□□□ 1.72
SNX3-201ENST00000230085 UBE2Q2Q8WVN8 375 aa25.79■■□□□ 1.72
SNX3-201ENST00000230085 RGPD1P0DJD0 1748 aa25.78■■□□□ 1.72
SNX3-201ENST00000230085 AEBP1Q8IUX7 1158 aa25.78■■□□□ 1.72
SNX3-201ENST00000230085 SULT6B1Q6IMI4 303 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms