RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 ZKSCAN2Q63HK3 967 aa19.13■□□□□ 0.65
CCDC47-201ENST00000225726 ANKRD24Q8TF21 1146 aa19.13■□□□□ 0.65
CCDC47-201ENST00000225726 COL18A1P39060 1754 aa19.12■□□□□ 0.65
CCDC47-201ENST00000225726 CHL1O00533 1208 aa19.12■□□□□ 0.65
CCDC47-201ENST00000225726 MS4A1P11836 297 aa19.12■□□□□ 0.65
CCDC47-201ENST00000225726 PANK1Q8TE04 598 aa19.12■□□□□ 0.65
CCDC47-201ENST00000225726 SOS2Q07890 1332 aaPredicted RBP19.11■□□□□ 0.65
CCDC47-201ENST00000225726 MAP3K5Q99683 1374 aa19.11■□□□□ 0.65
CCDC47-201ENST00000225726 VAMP4O75379 141 aa19.11■□□□□ 0.65
CCDC47-201ENST00000225726 NHSL1Q5SYE7 1610 aa19.11■□□□□ 0.65
CCDC47-201ENST00000225726 LMO7Q8WWI1 1683 aa19.11■□□□□ 0.65
CCDC47-201ENST00000225726 GNAT3A8MTJ3 354 aa19.11■□□□□ 0.65
CCDC47-201ENST00000225726 KIF16BQ96L93 1317 aa19.11■□□□□ 0.65
CCDC47-201ENST00000225726 BRPF1P55201 1214 aaPredicted RBP19.1■□□□□ 0.65
CCDC47-201ENST00000225726 ZC3H6P61129 1189 aaKnown RBP19.1■□□□□ 0.65
CCDC47-201ENST00000225726 TSHZ2Q9NRE2 1034 aa19.1■□□□□ 0.65
CCDC47-201ENST00000225726 LRRC59Q96AG4 307 aaKnown RBP19.1■□□□□ 0.65
CCDC47-201ENST00000225726 AXIN2Q9Y2T1 843 aa19.1■□□□□ 0.65
CCDC47-201ENST00000225726 AAMPQ13685 434 aa19.09■□□□□ 0.65
CCDC47-201ENST00000225726 TWISTNBQ3B726 338 aaPredicted RBP19.09■□□□□ 0.65
CCDC47-201ENST00000225726 TSPYL6Q8N831 410 aa19.09■□□□□ 0.65
CCDC47-201ENST00000225726 COG6Q9Y2V7 657 aa19.09■□□□□ 0.65
CCDC47-201ENST00000225726 FAM208AQ9UK61 1670 aaKnown RBP19.08■□□□□ 0.65
CCDC47-201ENST00000225726 CPDO75976 1380 aa19.08■□□□□ 0.65
CCDC47-201ENST00000225726 KIAA0232Q92628 1395 aa19.08■□□□□ 0.65
CCDC47-201ENST00000225726 ERBB3P21860 1342 aa19.08■□□□□ 0.64
CCDC47-201ENST00000225726 RLBP1P12271 317 aa19.08■□□□□ 0.64
CCDC47-201ENST00000225726 C8orf58Q8NAV2 365 aa19.08■□□□□ 0.64
CCDC47-201ENST00000225726 TNNQ9UQP3 1299 aa19.08■□□□□ 0.64
CCDC47-201ENST00000225726 IPO8O15397 1037 aaKnown RBP19.07■□□□□ 0.64
CCDC47-201ENST00000225726 DZIP1LQ8IYY4 767 aaKnown RBP19.07■□□□□ 0.64
CCDC47-201ENST00000225726 NOB1Q9ULX3 412 aaKnown RBP19.07■□□□□ 0.64
CCDC47-201ENST00000225726 ATF7IPQ6VMQ6 1270 aa19.06■□□□□ 0.64
CCDC47-201ENST00000225726 CABLES1Q8TDN4 633 aa19.06■□□□□ 0.64
CCDC47-201ENST00000225726 HAP1P54257 671 aaPredicted RBP19.06■□□□□ 0.64
CCDC47-201ENST00000225726 FTSJ3Q8IY81 847 aaKnown RBP19.06■□□□□ 0.64
CCDC47-201ENST00000225726 MRPL50Q8N5N7 158 aaKnown RBP19.05■□□□□ 0.64
CCDC47-201ENST00000225726 ABCA3Q99758 1704 aa19.05■□□□□ 0.64
CCDC47-201ENST00000225726 TRIM27P14373 513 aa19.05■□□□□ 0.64
CCDC47-201ENST00000225726 KDM2BQ8NHM5 1336 aa19.05■□□□□ 0.64
CCDC47-201ENST00000225726 AMOTQ4VCS5 1084 aa19.05■□□□□ 0.64
CCDC47-201ENST00000225726 PLEKHO1Q53GL0 409 aaPredicted RBP19.05■□□□□ 0.64
CCDC47-201ENST00000225726 CLUAP1Q96AJ1 413 aa19.04■□□□□ 0.64
CCDC47-201ENST00000225726 MVPQ14764 893 aaKnown RBP19.04■□□□□ 0.64
CCDC47-201ENST00000225726 CENPQQ7L2Z9 268 aaPredicted RBP19.04■□□□□ 0.64
CCDC47-201ENST00000225726 TSPYL4Q9UJ04 414 aa19.04■□□□□ 0.64
CCDC47-201ENST00000225726 ELL2O00472 640 aaPredicted RBP19.03■□□□□ 0.64
CCDC47-201ENST00000225726 ANO8Q9HCE9 1232 aaPredicted RBP19.03■□□□□ 0.64
CCDC47-201ENST00000225726 BABAM1Q9NWV8 329 aa19.03■□□□□ 0.64
CCDC47-201ENST00000225726 IL17REQ8NFR9 667 aa19.03■□□□□ 0.64
CCDC47-201ENST00000225726 LTBP4Q8N2S1 1624 aa19.03■□□□□ 0.64
CCDC47-201ENST00000225726 ARHGAP45Q92619 1136 aa19.02■□□□□ 0.64
CCDC47-201ENST00000225726 CEMIPQ8WUJ3 1361 aa19.02■□□□□ 0.63
CCDC47-201ENST00000225726 AKAP4Q5JQC9 854 aa19.01■□□□□ 0.63
CCDC47-201ENST00000225726 ZNF530Q6P9A1 599 aaPredicted RBP19.01■□□□□ 0.63
CCDC47-201ENST00000225726 PLEKHG2Q9H7P9 1386 aa19■□□□□ 0.63
CCDC47-201ENST00000225726 CHRNA2Q15822 529 aa18.99■□□□□ 0.63
CCDC47-201ENST00000225726 MIS18AQ9NYP9 233 aa18.99■□□□□ 0.63
CCDC47-201ENST00000225726 OVOS2A0A0G2JMS6 1433 aa18.99■□□□□ 0.63
CCDC47-201ENST00000225726 TAF7Q15545 349 aaPredicted RBP18.99■□□□□ 0.63
CCDC47-201ENST00000225726 NLRP2Q9NX02 1062 aa18.99■□□□□ 0.63
CCDC47-201ENST00000225726 KRT24Q2M2I5 525 aa18.98■□□□□ 0.63
CCDC47-201ENST00000225726 DDX19BQ9UMR2 479 aa18.98■□□□□ 0.63
CCDC47-201ENST00000225726 VIRMAQ69YN4 1812 aaKnown RBP18.98■□□□□ 0.63
CCDC47-201ENST00000225726 ROBO1Q9Y6N7 1651 aa18.98■□□□□ 0.63
CCDC47-201ENST00000225726 C1orf141Q5JVX7 400 aa18.97■□□□□ 0.63
CCDC47-201ENST00000225726 CSB-PGBD3P0DP91 1061 aa18.97■□□□□ 0.63
CCDC47-201ENST00000225726 SOS1Q07889 1333 aaPredicted RBP18.97■□□□□ 0.63
CCDC47-201ENST00000225726 AHDC1Q5TGY3 1603 aaPredicted RBP18.97■□□□□ 0.63
CCDC47-201ENST00000225726 ITPRIPQ8IWB1 547 aa18.97■□□□□ 0.63
CCDC47-201ENST00000225726 TMEM57Q8N5G2 664 aa18.97■□□□□ 0.63
CCDC47-201ENST00000225726 KDM3BQ7LBC6 1761 aa18.96■□□□□ 0.63
CCDC47-201ENST00000225726 RAPGEF4Q8WZA2 1011 aa18.96■□□□□ 0.63
CCDC47-201ENST00000225726 ADAMTS7Q9UKP4 1686 aa18.96■□□□□ 0.63
CCDC47-201ENST00000225726 ERICH6Q7L0X2 663 aa18.95■□□□□ 0.62
CCDC47-201ENST00000225726 TCERG1O14776 1098 aaKnown RBP18.95■□□□□ 0.62
CCDC47-201ENST00000225726 API5Q9BZZ5 524 aaKnown RBP18.95■□□□□ 0.62
CCDC47-201ENST00000225726 PRDM11Q9NQV5 511 aa18.95■□□□□ 0.62
CCDC47-201ENST00000225726 TATP17735 454 aaPredicted RBP18.94■□□□□ 0.62
CCDC47-201ENST00000225726 LGR6Q9HBX8 967 aa18.94■□□□□ 0.62
CCDC47-201ENST00000225726 ABCC4O15439 1325 aa18.94■□□□□ 0.62
CCDC47-201ENST00000225726 MEGF6O75095 1541 aa18.93■□□□□ 0.62
CCDC47-201ENST00000225726 RNMTO43148 476 aaKnown RBP18.93■□□□□ 0.62
CCDC47-201ENST00000225726 PKD1L3Q7Z443 1732 aa18.93■□□□□ 0.62
CCDC47-201ENST00000225726 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.93■□□□□ 0.621e-8■■■□□ 17.3
CCDC47-201ENST00000225726 IGHDP01880 384 aa18.92■□□□□ 0.62
CCDC47-201ENST00000225726 PCDHB15Q9Y5E8 787 aa18.92■□□□□ 0.62
CCDC47-201ENST00000225726 COL5A2P05997 1499 aaPredicted RBP18.92■□□□□ 0.62
CCDC47-201ENST00000225726 SIPA1L3O60292 1781 aaPredicted RBP18.92■□□□□ 0.62
CCDC47-201ENST00000225726 MPRIPQ6WCQ1 1025 aa18.91■□□□□ 0.62
CCDC47-201ENST00000225726 SPG7Q9UQ90 795 aa18.91■□□□□ 0.62
CCDC47-201ENST00000225726 TEFQ10587 303 aa18.91■□□□□ 0.62
CCDC47-201ENST00000225726 CHMP4BQ9H444 224 aaKnown RBP18.91■□□□□ 0.62
CCDC47-201ENST00000225726 WDR17Q8IZU2 1322 aa18.91■□□□□ 0.62
CCDC47-201ENST00000225726 PTPRCP08575 1304 aa18.91■□□□□ 0.62
CCDC47-201ENST00000225726 COL22A1Q8NFW1 1626 aaPredicted RBP18.91■□□□□ 0.62
CCDC47-201ENST00000225726 PARP4Q9UKK3 1724 aaKnown RBP18.9■□□□□ 0.62
CCDC47-201ENST00000225726 ZBTB40Q9NUA8 1239 aa18.89■□□□□ 0.61
CCDC47-201ENST00000225726 SCN11AQ9UI33 1791 aa18.89■□□□□ 0.61
CCDC47-201ENST00000225726 RWDD1Q9H446 243 aaPredicted RBP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms