RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 TSPYL6Q8N831 410 aa22.2■■□□□ 1.14
VRK1-201ENST00000216639 ARHGAP45Q92619 1136 aa22.2■■□□□ 1.14
VRK1-201ENST00000216639 MRPL50Q8N5N7 158 aaKnown RBP22.2■■□□□ 1.14
VRK1-201ENST00000216639 CRB1P82279 1406 aa22.19■■□□□ 1.14
VRK1-201ENST00000216639 KIAA0232Q92628 1395 aa22.19■■□□□ 1.14
VRK1-201ENST00000216639 NPHP3Q7Z494 1330 aa22.19■■□□□ 1.14
VRK1-201ENST00000216639 C8orf58Q8NAV2 365 aa22.19■■□□□ 1.14
VRK1-201ENST00000216639 STRCQ7RTU9 1775 aa22.18■■□□□ 1.14
VRK1-201ENST00000216639 GNAT3A8MTJ3 354 aa22.18■■□□□ 1.14
VRK1-201ENST00000216639 ELL2O00472 640 aaPredicted RBP22.18■■□□□ 1.14
VRK1-201ENST00000216639 ITPRIPQ8IWB1 547 aa22.18■■□□□ 1.14
VRK1-201ENST00000216639 ALS2Q96Q42 1657 aa22.17■■□□□ 1.14
VRK1-201ENST00000216639 CHMP4BQ9H444 224 aaKnown RBP22.17■■□□□ 1.14
VRK1-201ENST00000216639 IGHDP01880 384 aa22.16■■□□□ 1.14
VRK1-201ENST00000216639 RWDD1Q9H446 243 aaPredicted RBP22.16■■□□□ 1.14
VRK1-201ENST00000216639 MAP3K5Q99683 1374 aa22.16■■□□□ 1.14
VRK1-201ENST00000216639 NBPF6Q5VWK0 638 aa22.14■■□□□ 1.14
VRK1-201ENST00000216639 TMEM57Q8N5G2 664 aa22.14■■□□□ 1.14
VRK1-201ENST00000216639 NBPF4Q96M43 638 aa22.14■■□□□ 1.14
VRK1-201ENST00000216639 USHBP1Q8N6Y0 703 aa22.14■■□□□ 1.13
VRK1-201ENST00000216639 TSPYL4Q9UJ04 414 aa22.14■■□□□ 1.13
VRK1-201ENST00000216639 API5Q9BZZ5 524 aaKnown RBP22.13■■□□□ 1.13
VRK1-201ENST00000216639 PCDHB15Q9Y5E8 787 aa22.13■■□□□ 1.13
VRK1-201ENST00000216639 PLEKHG5O94827 1062 aa22.12■■□□□ 1.13
VRK1-201ENST00000216639 LRRC37A3O60309 1634 aa22.12■■□□□ 1.13
VRK1-201ENST00000216639 BABAM1Q9NWV8 329 aa22.11■■□□□ 1.13
VRK1-201ENST00000216639 TNS3Q68CZ2 1445 aa22.11■■□□□ 1.13
VRK1-201ENST00000216639 ANKRD24Q8TF21 1146 aa22.11■■□□□ 1.13
VRK1-201ENST00000216639 XIRP1Q702N8 1843 aaKnown RBP22.11■■□□□ 1.13
VRK1-201ENST00000216639 PDE4AP27815 886 aa22.1■■□□□ 1.13
VRK1-201ENST00000216639 MED1Q15648 1581 aaPredicted RBP22.09■■□□□ 1.13
VRK1-201ENST00000216639 AMOTQ4VCS5 1084 aa22.09■■□□□ 1.13
VRK1-201ENST00000216639 PLEKHO1Q53GL0 409 aaPredicted RBP22.09■■□□□ 1.13
VRK1-201ENST00000216639 NCAPD2Q15021 1401 aa22.08■■□□□ 1.13
VRK1-201ENST00000216639 LRRC59Q96AG4 307 aaKnown RBP22.08■■□□□ 1.12
VRK1-201ENST00000216639 PXDNQ92626 1479 aa22.07■■□□□ 1.12
VRK1-201ENST00000216639 SKAP1Q86WV1 359 aa22.07■■□□□ 1.12
VRK1-201ENST00000216639 DDX17Q92841 729 aaKnown RBP22.07■■□□□ 1.12
VRK1-201ENST00000216639 BACH2Q9BYV9 841 aa22.07■■□□□ 1.12
VRK1-201ENST00000216639 ZBTB40Q9NUA8 1239 aa22.07■■□□□ 1.12
VRK1-201ENST00000216639 ABCC4O15439 1325 aa22.07■■□□□ 1.12
VRK1-201ENST00000216639 TAF7Q15545 349 aaPredicted RBP22.06■■□□□ 1.12
VRK1-201ENST00000216639 MIS18AQ9NYP9 233 aa22.06■■□□□ 1.12
VRK1-201ENST00000216639 SOS1Q07889 1333 aaPredicted RBP22.06■■□□□ 1.12
VRK1-201ENST00000216639 ZNF335Q9H4Z2 1342 aaPredicted RBP22.06■■□□□ 1.12
VRK1-201ENST00000216639 RGS3P49796 1198 aa22.06■■□□□ 1.12
VRK1-201ENST00000216639 ZC3H6P61129 1189 aaKnown RBP22.06■■□□□ 1.12
VRK1-201ENST00000216639 HDAC1Q13547 482 aaPredicted RBP22.06■■□□□ 1.12
VRK1-201ENST00000216639 KRT24Q2M2I5 525 aa22.06■■□□□ 1.12
VRK1-201ENST00000216639 IL17REQ8NFR9 667 aa22.06■■□□□ 1.12
VRK1-201ENST00000216639 SPATA31A3Q5VYP0 1347 aa22.06■■□□□ 1.12
VRK1-201ENST00000216639 RGPD2P0DJD1 1756 aa22.05■■□□□ 1.12
VRK1-201ENST00000216639 CAMTA1Q9Y6Y1 1673 aa22.05■■□□□ 1.12
VRK1-201ENST00000216639 PTPRCP08575 1304 aa22.04■■□□□ 1.12
VRK1-201ENST00000216639 AKAP4Q5JQC9 854 aa22.04■■□□□ 1.12
VRK1-201ENST00000216639 BRINP3Q76B58 766 aa22.04■■□□□ 1.12
VRK1-201ENST00000216639 ERBB3P21860 1342 aa22.03■■□□□ 1.12
VRK1-201ENST00000216639 AXIN2Q9Y2T1 843 aa22.03■■□□□ 1.12
VRK1-201ENST00000216639 ABCC6O95255 1503 aa22.03■■□□□ 1.12
VRK1-201ENST00000216639 CEMIPQ8WUJ3 1361 aa22.02■■□□□ 1.12
VRK1-201ENST00000216639 ZNF530Q6P9A1 599 aaPredicted RBP22.02■■□□□ 1.12
VRK1-201ENST00000216639 SLAIN2Q9P270 581 aa22.02■■□□□ 1.12
VRK1-201ENST00000216639 ZBTB7BO15156 539 aaPredicted RBP22.01■■□□□ 1.11
VRK1-201ENST00000216639 C1orf141Q5JVX7 400 aa22.01■■□□□ 1.11
VRK1-201ENST00000216639 LMO7Q8WWI1 1683 aa22.01■■□□□ 1.11
VRK1-201ENST00000216639 ANP32AP39687 249 aaKnown RBP22■■□□□ 1.11
VRK1-201ENST00000216639 FAM161AQ3B820 660 aa22■■□□□ 1.11
VRK1-201ENST00000216639 STK31Q9BXU1 1019 aa22■■□□□ 1.11
VRK1-201ENST00000216639 SLC4A2P04920 1241 aa21.99■■□□□ 1.11
VRK1-201ENST00000216639 RGPD5Q99666 1765 aa21.99■■□□□ 1.11
VRK1-201ENST00000216639 CCDC30Q5VVM6 783 aa21.98■■□□□ 1.11
VRK1-201ENST00000216639 OVOS2A0A0G2JMS6 1433 aa21.98■■□□□ 1.11
VRK1-201ENST00000216639 INTS3Q68E01 1043 aaKnown RBP21.97■■□□□ 1.11
VRK1-201ENST00000216639 CHMP4AQ9BY43 222 aa21.97■■□□□ 1.11
VRK1-201ENST00000216639 PDZRN3Q9UPQ7 1066 aa21.97■■□□□ 1.11
VRK1-201ENST00000216639 CPDO75976 1380 aa21.97■■□□□ 1.11
VRK1-201ENST00000216639 TEFQ10587 303 aa21.97■■□□□ 1.11
VRK1-201ENST00000216639 CRYBG1Q9Y4K1 1723 aa21.96■■□□□ 1.11
VRK1-201ENST00000216639 CABLES1Q8TDN4 633 aa21.96■■□□□ 1.11
VRK1-201ENST00000216639 RAPGEF4Q8WZA2 1011 aa21.96■■□□□ 1.11
VRK1-201ENST00000216639 NLRP2Q9NX02 1062 aa21.96■■□□□ 1.11
VRK1-201ENST00000216639 FAM208AQ9UK61 1670 aaKnown RBP21.96■■□□□ 1.11
VRK1-201ENST00000216639 SOS2Q07890 1332 aaPredicted RBP21.96■■□□□ 1.11
VRK1-201ENST00000216639 COL18A1P39060 1754 aa21.95■■□□□ 1.1
VRK1-201ENST00000216639 CSB-PGBD3P0DP91 1061 aa21.95■■□□□ 1.1
VRK1-201ENST00000216639 PLEKHG2Q9H7P9 1386 aa21.95■■□□□ 1.1
VRK1-201ENST00000216639 LGR6Q9HBX8 967 aa21.94■■□□□ 1.1
VRK1-201ENST00000216639 SMC5Q8IY18 1101 aa21.94■■□□□ 1.1
VRK1-201ENST00000216639 RGS12O14924 1447 aa21.94■■□□□ 1.1
VRK1-201ENST00000216639 TATP17735 454 aaPredicted RBP21.93■■□□□ 1.1
VRK1-201ENST00000216639 RNMTO43148 476 aaKnown RBP21.92■■□□□ 1.1
VRK1-201ENST00000216639 HOXB7P09629 217 aa21.92■■□□□ 1.1
VRK1-201ENST00000216639 MPRIPQ6WCQ1 1025 aa21.92■■□□□ 1.1
VRK1-201ENST00000216639 BTBD11A6QL63 1104 aa21.91■■□□□ 1.1
VRK1-201ENST00000216639 C8orf34Q49A92 452 aa21.91■■□□□ 1.1
VRK1-201ENST00000216639 SPG7Q9UQ90 795 aa21.91■■□□□ 1.1
VRK1-201ENST00000216639 CHRNA2Q15822 529 aa21.9■■□□□ 1.1
VRK1-201ENST00000216639 GCC1Q96CN9 775 aa21.9■■□□□ 1.1
VRK1-201ENST00000216639 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.9■■□□□ 1.13e-6■■■□□ 16.4
VRK1-201ENST00000216639 KDM3BQ7LBC6 1761 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms