RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 CRBNQ96SW2 442 aa25.41■■□□□ 1.66
TNFRSF1A-201ENST00000162749 FAM208AQ9UK61 1670 aaKnown RBP25.41■■□□□ 1.66
TNFRSF1A-201ENST00000162749 LRRC37A3O60309 1634 aa25.41■■□□□ 1.66
TNFRSF1A-201ENST00000162749 BCL2L13Q9BXK5 485 aa25.4■■□□□ 1.66
TNFRSF1A-201ENST00000162749 CRB1P82279 1406 aa25.39■■□□□ 1.66
TNFRSF1A-201ENST00000162749 RTF1Q92541 710 aaKnown RBP25.39■■□□□ 1.65
TNFRSF1A-201ENST00000162749 VIRMAQ69YN4 1812 aaKnown RBP25.38■■□□□ 1.65
TNFRSF1A-201ENST00000162749 CHRNA2Q15822 529 aa25.38■■□□□ 1.65
TNFRSF1A-201ENST00000162749 GNAT3A8MTJ3 354 aa25.37■■□□□ 1.65
TNFRSF1A-201ENST00000162749 HTATSF1O43719 755 aaKnown RBP25.36■■□□□ 1.65
TNFRSF1A-201ENST00000162749 MAP3K5Q99683 1374 aa25.36■■□□□ 1.65
TNFRSF1A-201ENST00000162749 CCDC136Q96JN2 1154 aa25.36■■□□□ 1.65
TNFRSF1A-201ENST00000162749 AHDC1Q5TGY3 1603 aaPredicted RBP25.35■■□□□ 1.65
TNFRSF1A-201ENST00000162749 FRAT1Q92837 279 aaPredicted RBP25.35■■□□□ 1.65
TNFRSF1A-201ENST00000162749 CHL1O00533 1208 aa25.35■■□□□ 1.65
TNFRSF1A-201ENST00000162749 CANXP27824 592 aaKnown RBP25.35■■□□□ 1.65
TNFRSF1A-201ENST00000162749 SSH1Q8WYL5 1049 aa25.35■■□□□ 1.65
TNFRSF1A-201ENST00000162749 PDE3AQ14432 1141 aa25.34■■□□□ 1.65
TNFRSF1A-201ENST00000162749 TSPYL6Q8N831 410 aa25.33■■□□□ 1.65
TNFRSF1A-201ENST00000162749 SMC4Q9NTJ3 1288 aa25.33■■□□□ 1.65
TNFRSF1A-201ENST00000162749 ZNF428Q96B54 188 aa25.32■■□□□ 1.64
TNFRSF1A-201ENST00000162749 VAMP4O75379 141 aa25.31■■□□□ 1.64
TNFRSF1A-201ENST00000162749 PRDM11Q9NQV5 511 aa25.31■■□□□ 1.64
TNFRSF1A-201ENST00000162749 HAP1P54257 671 aaPredicted RBP25.3■■□□□ 1.64
TNFRSF1A-201ENST00000162749 ALDH1L2Q3SY69 923 aa25.3■■□□□ 1.64
TNFRSF1A-201ENST00000162749 C8orf58Q8NAV2 365 aa25.3■■□□□ 1.64
TNFRSF1A-201ENST00000162749 IL17REQ8NFR9 667 aa25.3■■□□□ 1.64
TNFRSF1A-201ENST00000162749 NLRP2Q9NX02 1062 aa25.3■■□□□ 1.64
TNFRSF1A-201ENST00000162749 TWISTNBQ3B726 338 aaPredicted RBP25.29■■□□□ 1.64
TNFRSF1A-201ENST00000162749 ELL2O00472 640 aaPredicted RBP25.28■■□□□ 1.64
TNFRSF1A-201ENST00000162749 AMOTQ4VCS5 1084 aa25.28■■□□□ 1.64
TNFRSF1A-201ENST00000162749 PLEKHO1Q53GL0 409 aaPredicted RBP25.28■■□□□ 1.64
TNFRSF1A-201ENST00000162749 PANK1Q8TE04 598 aa25.28■■□□□ 1.64
TNFRSF1A-201ENST00000162749 CSB-PGBD3P0DP91 1061 aa25.27■■□□□ 1.64
TNFRSF1A-201ENST00000162749 CEMIPQ8WUJ3 1361 aa25.27■■□□□ 1.64
TNFRSF1A-201ENST00000162749 MIS18AQ9NYP9 233 aa25.27■■□□□ 1.64
TNFRSF1A-201ENST00000162749 TNNQ9UQP3 1299 aa25.27■■□□□ 1.64
TNFRSF1A-201ENST00000162749 ZNF530Q6P9A1 599 aaPredicted RBP25.26■■□□□ 1.63
TNFRSF1A-201ENST00000162749 COL22A1Q8NFW1 1626 aaPredicted RBP25.25■■□□□ 1.63
TNFRSF1A-201ENST00000162749 ZKSCAN2Q63HK3 967 aa25.25■■□□□ 1.63
TNFRSF1A-201ENST00000162749 COL5A2P05997 1499 aaPredicted RBP25.25■■□□□ 1.63
TNFRSF1A-201ENST00000162749 RLBP1P12271 317 aa25.25■■□□□ 1.63
TNFRSF1A-201ENST00000162749 AKAP4Q5JQC9 854 aa25.25■■□□□ 1.63
TNFRSF1A-201ENST00000162749 TSPYL4Q9UJ04 414 aa25.25■■□□□ 1.63
TNFRSF1A-201ENST00000162749 KIF16BQ96L93 1317 aa25.24■■□□□ 1.63
TNFRSF1A-201ENST00000162749 MEGF6O75095 1541 aa25.24■■□□□ 1.63
TNFRSF1A-201ENST00000162749 PHLPP1O60346 1717 aa25.24■■□□□ 1.63
TNFRSF1A-201ENST00000162749 KRT24Q2M2I5 525 aa25.24■■□□□ 1.63
TNFRSF1A-201ENST00000162749 BRPF1P55201 1214 aaPredicted RBP25.24■■□□□ 1.63
TNFRSF1A-201ENST00000162749 COG6Q9Y2V7 657 aa25.24■■□□□ 1.63
TNFRSF1A-201ENST00000162749 RAPGEF4Q8WZA2 1011 aa25.23■■□□□ 1.63
TNFRSF1A-201ENST00000162749 CLUAP1Q96AJ1 413 aa25.22■■□□□ 1.63
TNFRSF1A-201ENST00000162749 NOB1Q9ULX3 412 aaKnown RBP25.22■■□□□ 1.63
TNFRSF1A-201ENST00000162749 COL16A1Q07092 1604 aaPredicted RBP25.22■■□□□ 1.63
TNFRSF1A-201ENST00000162749 WDR17Q8IZU2 1322 aa25.22■■□□□ 1.63
TNFRSF1A-201ENST00000162749 PKD1L3Q7Z443 1732 aa25.21■■□□□ 1.63
TNFRSF1A-201ENST00000162749 TRIM27P14373 513 aa25.21■■□□□ 1.63
TNFRSF1A-201ENST00000162749 ADAMTS7Q9UKP4 1686 aa25.21■■□□□ 1.63
TNFRSF1A-201ENST00000162749 LGR6Q9HBX8 967 aa25.21■■□□□ 1.63
TNFRSF1A-201ENST00000162749 ATF7IPQ6VMQ6 1270 aa25.2■■□□□ 1.62
TNFRSF1A-201ENST00000162749 KDM3BQ7LBC6 1761 aa25.2■■□□□ 1.62
TNFRSF1A-201ENST00000162749 PLEKHG2Q9H7P9 1386 aa25.2■■□□□ 1.62
TNFRSF1A-201ENST00000162749 TAF7Q15545 349 aaPredicted RBP25.2■■□□□ 1.62
TNFRSF1A-201ENST00000162749 C1orf141Q5JVX7 400 aa25.2■■□□□ 1.62
TNFRSF1A-201ENST00000162749 MRPL50Q8N5N7 158 aaKnown RBP25.19■■□□□ 1.62
TNFRSF1A-201ENST00000162749 SIPA1L3O60292 1781 aaPredicted RBP25.19■■□□□ 1.62
TNFRSF1A-201ENST00000162749 MPRIPQ6WCQ1 1025 aa25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 DZIP1LQ8IYY4 767 aaKnown RBP25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 BABAM1Q9NWV8 329 aa25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 SCN11AQ9UI33 1791 aa25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 TATP17735 454 aaPredicted RBP25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 FTSJ3Q8IY81 847 aaKnown RBP25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 PARP4Q9UKK3 1724 aaKnown RBP25.18■■□□□ 1.62
TNFRSF1A-201ENST00000162749 OVOS2A0A0G2JMS6 1433 aa25.17■■□□□ 1.62
TNFRSF1A-201ENST00000162749 TOM1O60784 492 aa25.17■■□□□ 1.62
TNFRSF1A-201ENST00000162749 TCERG1O14776 1098 aaKnown RBP25.17■■□□□ 1.62
TNFRSF1A-201ENST00000162749 IPO8O15397 1037 aaKnown RBP25.17■■□□□ 1.62
TNFRSF1A-201ENST00000162749 MS4A1P11836 297 aa25.17■■□□□ 1.62
TNFRSF1A-201ENST00000162749 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.16■■□□□ 1.62
TNFRSF1A-201ENST00000162749 CACNA1FO60840 1977 aa25.16■■□□□ 1.62
TNFRSF1A-201ENST00000162749 COL14A1Q05707 1796 aaKnown RBP25.15■■□□□ 1.62
TNFRSF1A-201ENST00000162749 TOM1L2Q6ZVM7 507 aa25.15■■□□□ 1.62
TNFRSF1A-201ENST00000162749 RNMTO43148 476 aaKnown RBP25.14■■□□□ 1.61
TNFRSF1A-201ENST00000162749 MVPQ14764 893 aaKnown RBP25.14■■□□□ 1.61
TNFRSF1A-201ENST00000162749 SPG7Q9UQ90 795 aa25.13■■□□□ 1.61
TNFRSF1A-201ENST00000162749 PIP4K2BP78356 416 aa25.13■■□□□ 1.61
TNFRSF1A-201ENST00000162749 TEFQ10587 303 aa25.13■■□□□ 1.61
TNFRSF1A-201ENST00000162749 ARHGAP45Q92619 1136 aa25.12■■□□□ 1.61
TNFRSF1A-201ENST00000162749 STRN4Q9NRL3 753 aa25.12■■□□□ 1.61
TNFRSF1A-201ENST00000162749 LARP1Q6PKG0 1096 aaKnown RBP25.1■■□□□ 1.61
TNFRSF1A-201ENST00000162749 CARD10Q9BWT7 1032 aa25.1■■□□□ 1.61
TNFRSF1A-201ENST00000162749 PHKG2P15735 406 aa25.1■■□□□ 1.61
TNFRSF1A-201ENST00000162749 KDM6AO15550 1401 aaPredicted RBP25.1■■□□□ 1.61
TNFRSF1A-201ENST00000162749 AAMPQ13685 434 aa25.09■■□□□ 1.61
TNFRSF1A-201ENST00000162749 KDM2BQ8NHM5 1336 aa25.09■■□□□ 1.61
TNFRSF1A-201ENST00000162749 TMEM57Q8N5G2 664 aa25.09■■□□□ 1.61
TNFRSF1A-201ENST00000162749 BTG4Q9NY30 223 aa25.09■■□□□ 1.61
TNFRSF1A-201ENST00000162749 EVA1CP58658 441 aa25.08■■□□□ 1.61
TNFRSF1A-201ENST00000162749 SHANK3Q9BYB0 1731 aa25.08■■□□□ 1.61
TNFRSF1A-201ENST00000162749 CYP27B1O15528 508 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms