RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 MRPL50Q8N5N7 158 aaKnown RBP18.32■□□□□ 0.52
RTFDC1-201ENST00000023939 TSPYL6Q8N831 410 aa18.32■□□□□ 0.52
RTFDC1-201ENST00000023939 XIRP1Q702N8 1843 aaKnown RBP18.31■□□□□ 0.52
RTFDC1-201ENST00000023939 LRRC37A3O60309 1634 aa18.31■□□□□ 0.52
RTFDC1-201ENST00000023939 MCM10Q7L590 875 aa18.31■□□□□ 0.52
RTFDC1-201ENST00000023939 RTF1Q92541 710 aaKnown RBP18.31■□□□□ 0.52
RTFDC1-201ENST00000023939 NPHP3Q7Z494 1330 aa18.31■□□□□ 0.52
RTFDC1-201ENST00000023939 C8orf58Q8NAV2 365 aa18.3■□□□□ 0.52
RTFDC1-201ENST00000023939 DDX19BQ9UMR2 479 aa18.29■□□□□ 0.52
RTFDC1-201ENST00000023939 MED1Q15648 1581 aaPredicted RBP18.29■□□□□ 0.52
RTFDC1-201ENST00000023939 MAP3K5Q99683 1374 aa18.28■□□□□ 0.52
RTFDC1-201ENST00000023939 GNAT3A8MTJ3 354 aa18.28■□□□□ 0.52
RTFDC1-201ENST00000023939 LTV1Q96GA3 475 aaPredicted RBP18.28■□□□□ 0.52
RTFDC1-201ENST00000023939 BABAM1Q9NWV8 329 aa18.28■□□□□ 0.52
RTFDC1-201ENST00000023939 CAMTA1Q9Y6Y1 1673 aa18.27■□□□□ 0.52
RTFDC1-201ENST00000023939 PXDNQ92626 1479 aa18.27■□□□□ 0.52
RTFDC1-201ENST00000023939 NBPF6Q5VWK0 638 aa18.27■□□□□ 0.52
RTFDC1-201ENST00000023939 NBPF4Q96M43 638 aa18.27■□□□□ 0.52
RTFDC1-201ENST00000023939 IGHDP01880 384 aa18.26■□□□□ 0.51
RTFDC1-201ENST00000023939 ABCC6O95255 1503 aa18.26■□□□□ 0.51
RTFDC1-201ENST00000023939 TNS3Q68CZ2 1445 aa18.26■□□□□ 0.51
RTFDC1-201ENST00000023939 PCDHB15Q9Y5E8 787 aa18.26■□□□□ 0.51
RTFDC1-201ENST00000023939 LMOD2Q6P5Q4 547 aa18.25■□□□□ 0.51
RTFDC1-201ENST00000023939 TMEM57Q8N5G2 664 aa18.24■□□□□ 0.51
RTFDC1-201ENST00000023939 SOS1Q07889 1333 aaPredicted RBP18.24■□□□□ 0.51
RTFDC1-201ENST00000023939 CHMP4BQ9H444 224 aaKnown RBP18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 ABCC4O15439 1325 aa18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 SPATA31A3Q5VYP0 1347 aa18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 ELL2O00472 640 aaPredicted RBP18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 ITPRIPQ8IWB1 547 aa18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 API5Q9BZZ5 524 aaKnown RBP18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 RWDD1Q9H446 243 aaPredicted RBP18.23■□□□□ 0.51
RTFDC1-201ENST00000023939 CEMIPQ8WUJ3 1361 aa18.22■□□□□ 0.51
RTFDC1-201ENST00000023939 LMO7Q8WWI1 1683 aa18.22■□□□□ 0.51
RTFDC1-201ENST00000023939 USHBP1Q8N6Y0 703 aa18.22■□□□□ 0.51
RTFDC1-201ENST00000023939 IL17REQ8NFR9 667 aa18.22■□□□□ 0.51
RTFDC1-201ENST00000023939 ANKRD24Q8TF21 1146 aa18.22■□□□□ 0.51
RTFDC1-201ENST00000023939 ZBTB40Q9NUA8 1239 aa18.22■□□□□ 0.51
RTFDC1-201ENST00000023939 ZNF335Q9H4Z2 1342 aaPredicted RBP18.21■□□□□ 0.51
RTFDC1-201ENST00000023939 AMOTQ4VCS5 1084 aa18.21■□□□□ 0.51
RTFDC1-201ENST00000023939 BRINP3Q76B58 766 aa18.21■□□□□ 0.51
RTFDC1-201ENST00000023939 TSPYL4Q9UJ04 414 aa18.21■□□□□ 0.51
RTFDC1-201ENST00000023939 HDAC1Q13547 482 aaPredicted RBP18.2■□□□□ 0.5
RTFDC1-201ENST00000023939 PLEKHG2Q9H7P9 1386 aa18.2■□□□□ 0.5
RTFDC1-201ENST00000023939 CRYBG1Q9Y4K1 1723 aa18.2■□□□□ 0.5
RTFDC1-201ENST00000023939 AXIN2Q9Y2T1 843 aa18.2■□□□□ 0.5
RTFDC1-201ENST00000023939 RGPD2P0DJD1 1756 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 ERBB3P21860 1342 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 ZBTB7CA1YPR0 619 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 PDE4AP27815 886 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 TAF7Q15545 349 aaPredicted RBP18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 PLEKHO1Q53GL0 409 aaPredicted RBP18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 DDX17Q92841 729 aaKnown RBP18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 LRRC59Q96AG4 307 aaKnown RBP18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 BACH2Q9BYV9 841 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 CPDO75976 1380 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 COL18A1P39060 1754 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 OVOS2A0A0G2JMS6 1433 aa18.19■□□□□ 0.5
RTFDC1-201ENST00000023939 KRT24Q2M2I5 525 aa18.18■□□□□ 0.5
RTFDC1-201ENST00000023939 AKAP4Q5JQC9 854 aa18.18■□□□□ 0.5
RTFDC1-201ENST00000023939 SLAIN2Q9P270 581 aa18.18■□□□□ 0.5
RTFDC1-201ENST00000023939 PTPRCP08575 1304 aa18.17■□□□□ 0.5
RTFDC1-201ENST00000023939 SOS2Q07890 1332 aaPredicted RBP18.17■□□□□ 0.5
RTFDC1-201ENST00000023939 ZBTB7BO15156 539 aaPredicted RBP18.16■□□□□ 0.5
RTFDC1-201ENST00000023939 SKAP1Q86WV1 359 aa18.16■□□□□ 0.5
RTFDC1-201ENST00000023939 MIS18AQ9NYP9 233 aa18.16■□□□□ 0.5
RTFDC1-201ENST00000023939 RGS12O14924 1447 aa18.15■□□□□ 0.5
RTFDC1-201ENST00000023939 ZC3H6P61129 1189 aaKnown RBP18.15■□□□□ 0.5
RTFDC1-201ENST00000023939 INTS3Q68E01 1043 aaKnown RBP18.15■□□□□ 0.5
RTFDC1-201ENST00000023939 FAM208AQ9UK61 1670 aaKnown RBP18.14■□□□□ 0.5
RTFDC1-201ENST00000023939 RGPD5Q99666 1765 aa18.14■□□□□ 0.49
RTFDC1-201ENST00000023939 ZNF530Q6P9A1 599 aaPredicted RBP18.13■□□□□ 0.49
RTFDC1-201ENST00000023939 ADAMTS7Q9UKP4 1686 aa18.12■□□□□ 0.49
RTFDC1-201ENST00000023939 SMC5Q8IY18 1101 aa18.12■□□□□ 0.49
RTFDC1-201ENST00000023939 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.11■□□□□ 0.492e-7■□□□□ 9.7
RTFDC1-201ENST00000023939 PLEKHG5O94827 1062 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 SLC4A2P04920 1241 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 HOXB7P09629 217 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 FAM161AQ3B820 660 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 C1orf141Q5JVX7 400 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 CCDC30Q5VVM6 783 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 PDZRN3Q9UPQ7 1066 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 KDM3BQ7LBC6 1761 aa18.1■□□□□ 0.49
RTFDC1-201ENST00000023939 RGS3P49796 1198 aa18.09■□□□□ 0.49
RTFDC1-201ENST00000023939 CABLES1Q8TDN4 633 aa18.09■□□□□ 0.49
RTFDC1-201ENST00000023939 CHMP4AQ9BY43 222 aa18.09■□□□□ 0.49
RTFDC1-201ENST00000023939 LGR6Q9HBX8 967 aa18.09■□□□□ 0.49
RTFDC1-201ENST00000023939 RNMTO43148 476 aaKnown RBP18.09■□□□□ 0.49
RTFDC1-201ENST00000023939 NHSL1Q5SYE7 1610 aa18.08■□□□□ 0.49
RTFDC1-201ENST00000023939 STK31Q9BXU1 1019 aa18.08■□□□□ 0.48
RTFDC1-201ENST00000023939 RAPGEF4Q8WZA2 1011 aa18.07■□□□□ 0.48
RTFDC1-201ENST00000023939 CACNA1FO60840 1977 aa18.07■□□□□ 0.48
RTFDC1-201ENST00000023939 EIF4A1P60842 406 aaKnown RBP18.06■□□□□ 0.48
RTFDC1-201ENST00000023939 TEFQ10587 303 aa18.06■□□□□ 0.48
RTFDC1-201ENST00000023939 C8orf34Q49A92 452 aa18.06■□□□□ 0.48
RTFDC1-201ENST00000023939 NLRP2Q9NX02 1062 aa18.06■□□□□ 0.48
RTFDC1-201ENST00000023939 TATP17735 454 aaPredicted RBP18.05■□□□□ 0.48
RTFDC1-201ENST00000023939 MPRIPQ6WCQ1 1025 aa18.05■□□□□ 0.48
RTFDC1-201ENST00000023939 ANP32AP39687 249 aaKnown RBP18.04■□□□□ 0.48
RTFDC1-201ENST00000023939 SPG7Q9UQ90 795 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms