RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ANKRD9Q96BM1 317 aaPredicted RBP3.82□□□□□ -1.8
CD44-239ENST00000639002 ASCL2Q99929 193 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 RAB6CQ9H0N0 254 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 SCPEP1Q9HB40 452 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 LUZP4Q9P127 313 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 OR14J1Q9UGF5 321 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 CAMK2AQ9UQM7 478 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 C2CD2Q9Y426 696 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 DISP3Q9P2K9 1392 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 A0A0G2JNG1 304 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 RRN3P2A6NIE6 340 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 TTC36A6NLP5 189 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 TMEM178BH3BS89 294 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 NKX2-2O95096 273 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 PYGLP06737 847 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 MSH3P20585 1137 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 ELF1P32519 619 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 CTCFP49711 727 aaPredicted RBP3.81□□□□□ -1.8
CD44-239ENST00000639002 MBTD1Q05BQ5 628 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 ACVR2BQ13705 512 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 KIR2DS5Q14953 304 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 TSSK4Q6SA08 328 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 SAAL1Q96ER3 474 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 MMABQ96EY8 250 aaPredicted RBP3.81□□□□□ -1.8
CD44-239ENST00000639002 TMEM68Q96MH6 324 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 AGXT2Q9BYV1 514 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 TRPC7Q9HCX4 862 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 COPG2Q9UBF2 871 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 CLIC4Q9Y696 253 aa3.81□□□□□ -1.8
CD44-239ENST00000639002 ARHGEF40Q8TER5 1519 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 SLC22A2O15244 555 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 IGLV1-44P01699 117 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 HMGB1P09429 215 aaKnown RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 ARL1P40616 181 aaPredicted RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 CCT5P48643 541 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 LUMP51884 338 aaPredicted RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 EIF3BP55884 814 aaKnown RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 CDC16Q13042 620 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 CDC73Q6P1J9 531 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 WDR20Q8TBZ3 569 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 UTP15Q8TED0 518 aaKnown RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 ABHD8Q96I13 439 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 SCLT1Q96NL6 688 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 SMC6Q96SB8 1091 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 STRA6Q9BX79 667 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 PAIP1Q9H074 479 aaKnown RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 BICC1Q9H694 974 aaKnown RBP3.8□□□□□ -1.8
CD44-239ENST00000639002 ADPRHL2Q9NX46 363 aa3.8□□□□□ -1.8
CD44-239ENST00000639002 A0A1W2PQF6 199 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 DUXAA6NLW8 204 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 SYNCRIPO60506 623 aaKnown RBP3.79□□□□□ -1.8
CD44-239ENST00000639002 PAGE4O60829 102 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 JRKO75564 520 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 PDE9AO76083 593 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 TFAP2AP05549 437 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 NR2C2P49116 596 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 F2RL1P55085 397 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 DCTN2Q13561 401 aaKnown RBP3.79□□□□□ -1.8
CD44-239ENST00000639002 CNTROBQ8N137 903 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 OR1J2Q8NGS2 313 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 DNAAF4Q8WXU2 420 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 OXNAD1Q96HP4 312 aaPredicted RBP3.79□□□□□ -1.8
CD44-239ENST00000639002 HARBI1Q96MB7 349 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 PIP5K1AQ99755 562 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 EGFL8Q99944 293 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 SLX1AQ9BQ83 275 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 MAGIXQ9H6Y5 334 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 ZBTB20Q9HC78 741 aaPredicted RBP3.79□□□□□ -1.8
CD44-239ENST00000639002 JRKLQ9Y4A0 524 aa3.79□□□□□ -1.8
CD44-239ENST00000639002 CCDC196A0A1B0GTZ2 297 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 NR3C1P04150 777 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 ICAM1P05362 532 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 MCCP23508 829 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 KRT2P35908 639 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 HARS2P49590 506 aaKnown RBP3.78□□□□□ -1.8
CD44-239ENST00000639002 CLK1P49759 484 aaKnown RBP3.78□□□□□ -1.8
CD44-239ENST00000639002 MLLT10P55197 1068 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 IRX1P78414 480 aaPredicted RBP3.78□□□□□ -1.8
CD44-239ENST00000639002 CEBPZQ03701 1054 aaKnown RBP3.78□□□□□ -1.8
CD44-239ENST00000639002 TMEM115Q12893 351 aaPredicted RBP3.78□□□□□ -1.8
CD44-239ENST00000639002 TMEM187Q14656 261 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 ZNF805Q5CZA5 627 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 HEATR4Q86WZ0 1026 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 RASGEF1CQ8N431 466 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 GBGT1Q8N5D6 347 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 SLC38A9Q8NBW4 561 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 HM13Q8TCT9 377 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 ZNF473Q8WTR7 871 aaKnown RBP3.78□□□□□ -1.8
CD44-239ENST00000639002 EGLN2Q96KS0 407 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 ATOH8Q96SQ7 321 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 PSD2Q9BQI7 771 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 PIGMQ9H3S5 423 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 WASH6PQ9NQA3 447 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 C2orf42Q9NWW7 574 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 TMEM181Q9P2C4 612 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 DNAJB4Q9UDY4 337 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 STK39Q9UEW8 545 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 PRSS21Q9Y6M0 314 aa3.78□□□□□ -1.8
CD44-239ENST00000639002 FLT1P17948 1338 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 A0A1W2PRG0 241 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms