RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GPS1Q13098 491 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 NFATC2Q13469 925 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 TRIP13Q15645 432 aaPredicted RBP20.46■□□□□ 0.87
CLN3-240ENST00000631023 GUSBP11Q6P575 273 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 TMPRSS7Q7RTY8 843 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 LRRTM4Q86VH4 590 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 TMPRSS12Q86WS5 348 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 ZDHHC1Q8WTX9 485 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 ULK4Q96C45 1275 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 PLEKHM1Q9Y4G2 1056 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 NEUROG3Q9Y4Z2 214 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 SLC30A1Q9Y6M5 507 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.46■□□□□ 0.87
CLN3-240ENST00000631023 MROH6A6NGR9 719 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 B4DGG1 531 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 KMOO15229 486 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 ITGALP20701 1170 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 ADRA1DP25100 572 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 GRIA1P42261 906 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 PAFAH1B1P43034 410 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 VPS41P49754 854 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 SARNPP82979 210 aaKnown RBP20.46■□□□□ 0.87
CLN3-240ENST00000631023 CERCAMQ5T4B2 595 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 DDHD1Q8NEL9 900 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 DNAJC1Q96KC8 554 aaKnown RBP20.46■□□□□ 0.87
CLN3-240ENST00000631023 CAPZA3Q96KX2 299 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 RANBP9Q96S59 729 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 RNF14Q9UBS8 474 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 ST14Q9Y5Y6 855 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 BPTFQ12830 3046 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 FAM221BA6H8Z2 402 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 H7C0S8 307 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 NOBOXO60393 691 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 ACP5P13686 325 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 SPINK2P20155 84 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 TPSB2P20231 275 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 MSH3P20585 1137 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 XIAPP98170 497 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 TPSAB1Q15661 275 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 GPR33Q49SQ1 333 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 KHDC1Q4VXA5 237 aaKnown RBP20.45■□□□□ 0.86
CLN3-240ENST00000631023 C14orf28Q4W4Y0 310 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 GPRC6AQ5T6X5 926 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 NLRP9Q7RTR0 991 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 SNX20Q7Z614 316 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 CREG2Q8IUH2 290 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 MAPK15Q8TD08 544 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 CDKN2AIPNLQ96HQ2 116 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 CRLS1Q9UJA2 301 aa20.45■□□□□ 0.86
CLN3-240ENST00000631023 CEP295Q9C0D2 2601 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 ECEL1O95672 775 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 JUPP14923 745 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 GLB1P16278 677 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 AKT1P31749 480 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 MC4RP32245 332 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 NPY2RP49146 381 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 CCDC38Q502W7 563 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 CRTC3Q6UUV7 619 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 C17orf53Q8N3J3 647 aaPredicted RBP20.44■□□□□ 0.86
CLN3-240ENST00000631023 HEXDCQ8WVB3 486 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 BFARQ9NZS9 450 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 KLK13Q9UKR3 277 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 MSRB2Q9Y3D2 182 aa20.44■□□□□ 0.86
CLN3-240ENST00000631023 PCYT1BQ9Y5K3 369 aaPredicted RBP20.44■□□□□ 0.86
CLN3-240ENST00000631023 AGAP14A8MT82 685 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 GPR39O43194 453 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 OPA1O60313 960 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 RALBP11234 206 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 VCLP18206 1134 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 PSMA3P25788 255 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 CASQ1P31415 396 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 ETF1P62495 437 aaKnown RBP20.43■□□□□ 0.86
CLN3-240ENST00000631023 BIRC2Q13490 618 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 PPP1R7Q15435 360 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 INSCQ1MX18 579 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 TRAPPC5Q8IUR0 188 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 PPHLN1Q8NEY8 458 aaKnown RBP20.43■□□□□ 0.86
CLN3-240ENST00000631023 PEX13Q92968 403 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 DCUN1D1Q96GG9 259 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 ZNF514Q96K75 400 aaPredicted RBP20.43■□□□□ 0.86
CLN3-240ENST00000631023 IL22Q9GZX6 179 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 RIMKLBQ9ULI2 386 aa20.43■□□□□ 0.86
CLN3-240ENST00000631023 CCL22O00626 93 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 NUDT21O43809 227 aaKnown RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 KCNJ13O60928 360 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 SLC2A4P14672 509 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 PNLIPP16233 465 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 ZNF7P17097 686 aaPredicted RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 CLCNKAP51800 687 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 SESN2P58004 480 aaPredicted RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 INSM1Q01101 510 aaPredicted RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 HLTFQ14527 1009 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLN3-240ENST00000631023 ZRANB3Q5FWF4 1079 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 PCID2Q5JVF3 399 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 HES3Q5TGS1 186 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CACTIN-AS1Q8N1I8 211 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 WDR48Q8TAF3 677 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 RUNDC3BQ96NL0 473 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 TIMM29Q9BSF4 260 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 DDX47Q9H0S4 455 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms