RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 LMX1AQ8TE12 382 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 HEXDCQ8WVB3 486 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 ZNF669Q96BR6 464 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 LRRC39Q96DD0 335 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 DCUN1D1Q96GG9 259 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 SCARF2Q96GP6 870 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 TCEAL2Q9H3H9 227 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 FAM96AQ9H5X1 160 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 FAM114A2Q9NRY5 505 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 ATXN10Q9UBB4 475 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 PNMA8BQ9ULN7 279 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 RPS6KL1Q9Y6S9 549 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 NEMP2A6NFY4 417 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 AGAP14A8MT82 685 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CFAP99D6REC4 459 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 AQP9O43315 295 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 MTX2O75431 263 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CDK14O94921 469 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 POLBP06746 335 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 PGAM1P18669 254 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 DGKAP23743 735 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 PPARGP37231 505 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 PLTPP55058 493 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 PUM1Q14671 1186 aaKnown RBP eCLIP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 ANKRD20A4Q4UJ75 823 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 FASTKD1Q53R41 847 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 AARS2Q5JTZ9 985 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 ZNF648Q5T619 568 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 KIAA0930Q6ICG6 404 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CENPUQ71F23 418 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 ADGRG6Q86SQ4 1221 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 GATAD2AQ86YP4 633 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CCNJLQ8IV13 435 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 ZNF548Q8NEK5 533 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 SAP25Q8TEE9 199 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 ART4Q93070 314 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 MFSD3Q96ES6 412 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 SGSM3Q96HU1 749 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 OR2M4Q96R27 311 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 COPS8Q99627 209 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 EBNA1BP2Q99848 306 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 LRRC61Q9BV99 259 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 EPB41L5Q9HCM4 733 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CATSPERZQ9NTU4 200 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 ZNHIT2Q9UHR6 403 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CDV3Q9UKY7 258 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 GPSM3Q9Y4H4 160 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 CSNK1G3Q9Y6M4 447 aa18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 GOLGA4Q13439 2230 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-216ENST00000626660 TRBV5-4A0A0C4DH59 114 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 ESYT3A0FGR9 886 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 OR51F1A6NGY5 319 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 SCAMP1O15126 338 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 TP73O15350 636 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 FLRT2O43155 660 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 NUAK1O60285 661 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 USP1O94782 785 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 VAPBO95292 243 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 TTC4O95801 387 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 ZNF8P17098 575 aaPredicted RBP18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 SDHBP21912 280 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 FOXN2P32314 431 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 TMEM115Q12893 351 aaPredicted RBP18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 PDIA2Q13087 525 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 MSS51Q4VC12 460 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 LYPLAL1Q5VWZ2 237 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 KCTD16Q68DU8 428 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 TMEM135Q86UB9 458 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 SERPINA9Q86WD7 417 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 OTUD6BQ8N6M0 293 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 SEC14L1Q92503 715 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 PWWP2AQ96N64 755 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 FOXP3Q9BZS1 431 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 TRNAU1APQ9NX07 287 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 ZDHHC3Q9NYG2 299 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 DMGDHQ9UI17 866 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 DOLKQ9UPQ8 538 aa18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 ARID1BQ8NFD5 2236 aaPredicted RBP18.89■□□□□ 0.61
SQSTM1-216ENST00000626660 GRID2O43424 1007 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 DNAJC6O75061 913 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 BANF1O75531 89 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 FUCA1P04066 466 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 ALPPL2P10696 532 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 ACRV1P26436 265 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 CA5AP35218 305 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 ELK3P41970 407 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 GRK6P43250 576 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 CDKN1CP49918 316 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 ILF3Q12906 894 aaKnown RBP eCLIP18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 C1orf61Q13536 156 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 LRP8Q14114 963 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 KHDC1Q4VXA5 237 aaKnown RBP18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 PYCR3Q53H96 274 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 PSAPL1Q6NUJ1 521 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 CERS6Q6ZMG9 384 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 LRRTM4Q86VH4 590 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 GKN2Q86XP6 184 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 TRAPPC5Q8IUR0 188 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 PIANPQ8IYJ0 282 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 AGGF1Q8N302 714 aaeCLIP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms