RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, human

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-229	ENST00000621897	TFB2M	Q9H5Q4	396 aa	Known RBP	4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	UPF2	Q9HAU5	1272 aa	Known RBP	4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	FAM118A	Q9NWS6	357 aa		4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	MARCH4	Q9P2E8	410 aa	Predicted RBP	4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	COPG2	Q9UBF2	871 aa		4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	POLG2	Q9UHN1	485 aa		4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	KIAA1210	Q9ULL0	1709 aa		4.14	□□□□□ -1.75
BRCA1-229	ENST00000621897	SNED1	Q8TER0	1413 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897		A0A1W2PRG0	241 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	TMEM178B	H3BS89	294 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	ATP2A1	O14983	1001 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	PRKN	O60260	465 aa	Predicted RBP	4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	CTSV	O60911	334 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	SEC14L2	O76054	403 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	WISP2	O76076	250 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	AGR2	O95994	175 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	SERPINB2	P05120	415 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	AHR	P35869	848 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	MYLK3	Q32MK0	819 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	TMEM30B	Q3MIR4	351 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	WDR38	Q5JTN6	314 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	NSUN5P2	Q63ZY6	315 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	SLC35E4	Q6ICL7	350 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	CEACAM20	Q6UY09	585 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	OR1J2	Q8NGS2	313 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	KCNG4	Q8TDN1	519 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	TAS1R2	Q8TE23	839 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	SCRN2	Q96FV2	425 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	WDFY2	Q96P53	400 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	RBM4	Q9BWF3	364 aa	Known RBP	4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	GFRA4	Q9GZZ7	299 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	PIGM	Q9H3S5	423 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	POLR1B	Q9H9Y6	1135 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	PREB	Q9HCU5	417 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	DLGAP2	Q9P1A6	1054 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	MAU2	Q9Y6X3	613 aa		4.13	□□□□□ -1.75
BRCA1-229	ENST00000621897	JRK	O75564	520 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	TUBB	P07437	444 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	CASP6	P55212	293 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	RPL7A	P62424	266 aa	Known RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	TUBB4B	P68371	445 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	POU5F1	Q01860	360 aa	Known RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	LMOD3	Q0VAK6	560 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	CCDC6	Q16204	474 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	CCNG2	Q16589	344 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	DPCR1	Q3MIW9	517 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	SLC27A1	Q6PCB7	646 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	CYP20A1	Q6UW02	462 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	ATF7IP	Q6VMQ6	1270 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897		Q75L30	129 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	ANO5	Q75V66	913 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	PIWIL4	Q7Z3Z4	852 aa	Known RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	KRTAP7-1	Q8IUC3	87 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	TMEM116	Q8NCL8	245 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	CTCFL	Q8NI51	663 aa	Predicted RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	PHF21A	Q96BD5	680 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	ARHGEF26	Q96DR7	871 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	C17orf77	Q96MU5	243 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	TMX4	Q9H1E5	349 aa	Predicted RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	RANBP17	Q9H2T7	1088 aa	Known RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	RANGRF	Q9HD47	186 aa	Predicted RBP	4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	TCP11L1	Q9NUJ3	509 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897	STK39	Q9UEW8	545 aa		4.12	□□□□□ -1.75
BRCA1-229	ENST00000621897		A0A1B0GVC2	190 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897		A0A1W2PPH5	198 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	EPB41L2	O43491	1005 aa	Known RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	BAG4	O95429	457 aa	Known RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	ICAM1	P05362	532 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	INHBA	P08476	426 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	ALDH4A1	P30038	563 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	CSTF3	Q12996	717 aa	Known RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	FCN2	Q15485	313 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	ZNF876P	Q49A33	203 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	LRIF1	Q5T3J3	769 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	STPG4	Q8N801	248 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	CNBD1	Q8NA66	436 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	UTP15	Q8TED0	518 aa	Known RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	FCAMR	Q8WWV6	532 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	SMARCE1	Q969G3	411 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	STAMBPL1	Q96FJ0	436 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	EGLN2	Q96KS0	407 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	MAP7D2	Q96T17	732 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	C9orf78	Q9NZ63	289 aa	Predicted RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	ZNF624	Q9P2J8	865 aa	Predicted RBP	4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	ZNF69	Q9UC07	566 aa		4.11	□□□□□ -1.75
BRCA1-229	ENST00000621897	SMIM1	B2RUZ4	78 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	BLOC1S5-TXNDC5	H3BN57	136 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	CIDEA	O60543	219 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	SPARC	P09486	303 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	CSF2RA	P15509	400 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	ERVK11-1	P61568	191 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	PDE1C	Q14123	709 aa	Predicted RBP	4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	TBCE	Q15813	527 aa	Predicted RBP	4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	PNLIPRP3	Q17RR3	467 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	ZNF805	Q5CZA5	627 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	SFMBT2	Q5VUG0	894 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	PLXDC2	Q6UX71	529 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	SEPT14	Q6ZU15	432 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	PLEKHM3	Q6ZWE6	761 aa		4.1	□□□□□ -1.75

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