RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RNF168Q8IYW5 571 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 SNX19Q92543 992 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 OTUB2Q96DC9 234 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 CMTM5Q96DZ9 223 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 ARNT2Q9HBZ2 717 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 MYOFQ9NZM1 2061 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3DA0A087WVF3 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3IA0A087WXS9 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3EA0A087X179 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3KA0A087X1G2 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3FA6NER0 549 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3LB9A6J9 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 MMP20O60882 483 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 PEX11AO75192 247 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3HP0C7X1 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 HALP42357 657 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 ARCN1P48444 511 aaKnown RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 ACAP2Q15057 778 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3GQ6DHY5 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3CQ6IPX1 549 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 RGS9BPQ6ZS82 235 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 NPAS3Q8IXF0 933 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TBC1D3Q8IZP1 549 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 OR14C36Q8NHC7 312 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TDRKHQ9Y2W6 561 aaKnown RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 ATP6V1G2O95670 118 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 SERPIND1P05546 499 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 RFLNAQ6ZTI6 216 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 ZFRQ96KR1 1074 aaKnown RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 CDH19Q9H159 772 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 INTS10Q9NVR2 710 aaKnown RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 UBDO15205 165 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 ESR1P03372 595 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 CALB2P22676 271 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 ARNTP27540 789 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 EIF4EBP2Q13542 120 aaPredicted RBP15.58■□□□□ 0.09
CPSF1-213ENST00000620219 C6orf10Q5SRN2 563 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 PCDH12Q9NPG4 1184 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 OXSMQ9NWU1 459 aa15.58■□□□□ 0.09
CPSF1-213ENST00000620219 C16orf96A6NNT2 1141 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 LINC01565O15544 149 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 LINC00032P0C843 101 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 KCNA5P22460 613 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 SH2D5Q6ZV89 423 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 ABHD8Q96I13 439 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 LRRC14BA6NHZ5 514 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 A8MT66 165 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 HSPA7P48741 367 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 ATP6V0D1P61421 351 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 NR6A1Q15406 480 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 C2orf73Q8N5S3 287 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-213ENST00000620219 ZNF513Q8N8E2 541 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-213ENST00000620219 TXNDC5Q8NBS9 432 aaKnown RBP15.58■□□□□ 0.08
CPSF1-213ENST00000620219 PPFIBP2Q8ND30 876 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 RDH11Q8TC12 318 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 ATG10Q9H0Y0 220 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 C9JVG2 144 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 GMNNO75496 209 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 BPIP17213 487 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 HMGCLP35914 325 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 SEMA3AQ14563 771 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 SLC9B1Q4ZJI4 515 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 MPP7Q5T2T1 576 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 MILR1Q7Z6M3 343 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 SNX32Q86XE0 403 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 BEND7Q8N7W2 519 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-213ENST00000620219 OSCP1Q8WVF1 389 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 VWCEQ96DN2 955 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 PDFQ9HBH1 243 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 MAGEE1Q9HCI5 957 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 OPTCQ9UBM4 332 aa15.58■□□□□ 0.08
CPSF1-213ENST00000620219 PDZK1P1A8MUH7 402 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 VGLL3A8MV65 326 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 NFATC2Q13469 925 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 RUNX3Q13761 415 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 DBN1Q16643 649 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CES4AQ5XG92 561 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CEP70Q8NHQ1 597 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 MCOLN3Q8TDD5 553 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 NSUN3Q9H649 340 aaKnown RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 RC3H2Q9HBD1 1191 aaKnown RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 EIF2B4Q9UI10 523 aaKnown RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 TRAF6Q9Y4K3 522 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 IRAK3Q9Y616 596 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 MYO16Q9Y6X6 1858 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 UPK3BL1B0FP48 263 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 UPK3BL2E5RIL1 263 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 H3BMM5 538 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 SLC31A1O15431 190 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 MSX2P35548 267 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CCDC15Q0P6D6 951 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 LRRC36Q1X8D7 754 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 FAM219BQ5XKK7 198 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 RAVER1Q8IY67 606 aaKnown RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 ZBTB2Q8N680 514 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 ADAMTS19Q8TE59 1207 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 WFIKKN2Q8TEU8 576 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 BTBD10Q9BSF8 475 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 RETREG1Q9H6L5 497 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 LILRB3O75022 631 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms