RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 INSRRP14616 1297 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ELK4P28324 431 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 GTF2E2P29084 291 aaKnown RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 SCNN1GP51170 649 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 MAMLD1Q13495 774 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 CBX2Q14781 532 aaPredicted RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 CYBRD1Q53TN4 286 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 FAXCQ5TGI0 409 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 GPAT2Q6NUI2 795 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ARMCX2Q7L311 632 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 KIF18BQ86Y91 864 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 PDIK1LQ8N165 341 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 C12orf57Q99622 126 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 CDADC1Q9BWV3 514 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ALOXE3Q9BYJ1 711 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 PRKAG2Q9UGJ0 569 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 AUP1Q9Y679 476 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 APOL1O14791 398 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 SLC22A2O15244 555 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ZNF623O75123 536 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 RASAL1O95294 804 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 NFICP08651 508 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 F8A1P23610 371 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 RPL10AP62906 217 aaKnown RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 CLDN10P78369 228 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 FAPQ12884 760 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ELOAQ14241 798 aaKnown RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 SMTNL2Q2TAL5 461 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ZNF699Q32M78 642 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 COLEC12Q5KU26 742 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 IER5Q5VY09 327 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ANKRD22Q5VYY1 191 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 PNCKQ6P2M8 343 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ENOSF1Q7L5Y1 443 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 LIX1LQ8IVB5 337 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ADGRF2Q8IZF7 708 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 TEX47Q8TBZ9 253 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 SLIRPQ9GZT3 109 aaKnown RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 ABCG4Q9H172 646 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 CXCL16Q9H2A7 254 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 COG4Q9H9E3 785 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 RANGRFQ9HD47 186 aaPredicted RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 SMPD3Q9NY59 655 aaPredicted RBP10.16□□□□□ -0.78
VPS39-214ENST00000614932 SFMBT1Q9UHJ3 866 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 NUDT5Q9UKK9 219 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 PRELID3BQ9Y3B1 194 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 NRP1O14786 923 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 KPNA5O15131 536 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 OGTO15294 1046 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 CAPN5O15484 640 aaPredicted RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 TADA2AO75478 443 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 TOP3BO95985 862 aaKnown RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 ZNF3P17036 446 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 POU3F3P20264 500 aaPredicted RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 ADORA2AP29274 412 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 GNPDA1P46926 289 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 GABRB2P47870 512 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 TPMTP51580 245 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 AP1S2P56377 157 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 DYNLT1P63172 113 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 GPR50Q13585 617 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 ATP6AP1Q15904 470 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 DUOXA2Q1HG44 320 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 SLC9B1Q4ZJI4 515 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 ZBTB37Q5TC79 503 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 TMEM81Q6P7N7 255 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 UNC5DQ6UXZ4 953 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 PRSS48Q7RTY5 328 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 SLC22A15Q8IZD6 547 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 FAM71DQ8N9W8 422 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 MCUQ8NE86 351 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 MCFD2Q8NI22 146 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 UPF1Q92900 1129 aaKnown RBP eCLIP10.15□□□□□ -0.783e-10■■■■□ 20.6
VPS39-214ENST00000614932 ZHX1-C8orf76Q96EF9 292 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 TMEM134Q9H6X4 195 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 BRD7Q9NPI1 651 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 GMPR2Q9P2T1 348 aaKnown RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 SAE1Q9UBE0 346 aaPredicted RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 EVPLQ92817 2033 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 AGAP5A6NIR3 686 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 OR6C65A6NJZ3 312 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 ITGBL1O95965 494 aaPredicted RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 GSRP00390 522 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 IFNB1P01574 187 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 PIGRP01833 764 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 PROS1P07225 676 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 ACADMP11310 421 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 ALOX12P18054 663 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 HMGCLP35914 325 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 PSMD8P48556 350 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 NKX3-2P78367 333 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 OGDHQ02218 1023 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 STARD3Q14849 445 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 C4orf46Q504U0 113 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 GPAT3Q53EU6 434 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 RBM48Q5RL73 367 aaKnown RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 LIN9Q5TKA1 542 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 TYW3Q6IPR3 259 aaKnown RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 CYP2R1Q6VVX0 501 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms