RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 KLHL5Q96PQ7 755 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 GAL3ST4Q96RP7 486 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 ITM2CQ9NQX7 267 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 DUSP10Q9Y6W6 482 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 PRAMEF1O95521 474 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 ACTR1BP42025 376 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 CLCNKBP51801 687 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 ACTR1AP61163 376 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 RALGPS1Q5JS13 557 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 ZC3H14Q6PJT7 736 aaKnown RBP20.32■□□□□ 0.84
UPF1-207ENST00000599848 TMEM145Q8NBT3 493 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 OR6K2Q8NGY2 324 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 PLEKHA1Q9HB21 404 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 IRS2Q9Y4H2 1338 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 MLLT3P42568 568 aaPredicted RBP20.32■□□□□ 0.84
UPF1-207ENST00000599848 PTGER3P43115 390 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 UAP1L1Q3KQV9 507 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 RASSF6Q6ZTQ3 369 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 RABEPKQ7Z6M1 372 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 AMER2Q8N7J2 671 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 NDC1Q9BTX1 674 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 WRAP53Q9BUR4 548 aaKnown RBP20.32■□□□□ 0.84
UPF1-207ENST00000599848 LRTM1Q9HBL6 345 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 RNF19AQ9NV58 838 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 STXBP5LQ9Y2K9 1186 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 GRIN2DO15399 1336 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 NAE1Q13564 534 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 NPNTQ6UXI9 565 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 NDNQ99608 321 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 PCDHGA11Q9Y5H2 935 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 RB1P06400 928 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 GABRB2P47870 512 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 PKNOX1P55347 436 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 FMO1Q01740 532 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 BRAT1Q6PJG6 821 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 CAMKVQ8NCB2 501 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 TSPAN14Q8NG11 270 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 KCTD4Q8WVF5 259 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 DHX33Q9H6R0 707 aaKnown RBP20.32■□□□□ 0.84
UPF1-207ENST00000599848 CHST7Q9NS84 486 aa20.32■□□□□ 0.84
UPF1-207ENST00000599848 PRORSD1PA6NEY8 169 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 RIIAD1A6NNX1 92 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 WNT9AO14904 365 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 MATN3O15232 486 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SNAP91O60641 907 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SLC22A3O75751 556 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 PIRTP0C851 137 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 RGS8P57771 180 aaPredicted RBP20.31■□□□□ 0.84
UPF1-207ENST00000599848 GRIK5Q16478 980 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 DNAJB7Q7Z6W7 309 aaPredicted RBP20.31■□□□□ 0.84
UPF1-207ENST00000599848 SLC9B2Q86UD5 537 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 ZNF527Q8NB42 609 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 KLHL6Q8WZ60 621 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SLC4A9Q96Q91 983 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 MRPS30Q9NP92 439 aaKnown RBP20.31■□□□□ 0.84
UPF1-207ENST00000599848 RUVBL1Q9Y265 456 aaKnown RBP20.31■□□□□ 0.84
UPF1-207ENST00000599848 MDM4O15151 490 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SERPINA3P01011 423 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 GCNT6Q5T4J0 391 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 OR5T3Q8NGG3 340 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 NKIRAS2Q9NYR9 191 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 FBXW2Q9UKT8 454 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 CASZ1Q86V15 1759 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 DUXAA6NLW8 204 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 TRIM38O00635 465 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 DNAJA2O60884 412 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 OR4Q2P0C623 313 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 CPN2P22792 545 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 CLCN7P51798 805 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SELENOVP59797 346 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 KCNK18Q7Z418 384 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SLC38A4Q969I6 547 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 KLHL32Q96NJ5 620 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 PSKH2Q96QS6 385 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 C6orf62Q9GZU0 229 aaPredicted RBP20.31■□□□□ 0.84
UPF1-207ENST00000599848 L2HGDHQ9H9P8 463 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 MSI1O43347 362 aaKnown RBP20.31■□□□□ 0.84
UPF1-207ENST00000599848 CCNB2O95067 398 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 JMJD7P0C870 316 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 HCAR3P49019 387 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 SLC13A2Q13183 592 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 DNAJC28Q9NX36 388 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 YIPF1Q9Y548 306 aa20.31■□□□□ 0.84
UPF1-207ENST00000599848 TTLL8A6PVC2 850 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 OR1F1O43749 312 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 ADH1BP00325 375 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 PRPS2P11908 318 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 MNDAP41218 407 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 GRK6P43250 576 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 PHF19Q5T6S3 580 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 RNASEH2BQ5TBB1 312 aaKnown RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 TMEM220Q6QAJ8 160 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 C12orf66Q96MD2 445 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 LGMNQ99538 433 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 GBA3Q9H227 469 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 DSN1Q9H410 356 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 SAMHD1Q9Y3Z3 626 aaKnown RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 CHRNGP07510 517 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 CTSOP43234 321 aaPredicted RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 CASP9P55211 416 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms