RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 GM2AP17900 193 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 CD6P30203 668 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 CRHR1P34998 444 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 ABCG1P45844 678 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 CCR5P51681 352 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 KPNA2P52292 529 aaKnown RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 TAS2R39P59534 338 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 MTAPQ13126 283 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 PDAP1Q13442 181 aaKnown RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 GTF2H3Q13889 308 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 INSCQ1MX18 579 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 TMEM259Q4ZIN3 620 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 ZNF789Q5FWF6 425 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 SEL1L3Q68CR1 1132 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 ADAMTSL4Q6UY14 1074 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 TBC1D1Q86TI0 1168 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 C4orf33Q8N1A6 199 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 DDHD1Q8NEL9 900 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 HIC2Q96JB3 615 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 LENG8Q96PV6 779 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 PANX3Q96QZ0 392 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 UHRF1Q96T88 793 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 NDNQ99608 321 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 SLC13A1Q9BZW2 595 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 P2RY12Q9H244 342 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 TRIM39Q9HCM9 518 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 MKS1Q9NXB0 559 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 KLHL42Q9P2K6 505 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 GRID1Q9ULK0 1009 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 TCF20Q9UGU0 1960 aaKnown RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 IGLV3-16A0A075B6K0 115 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 A6NNZ2 444 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 TM9SF1O15321 606 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 VEGFDO43915 354 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 OR1I1O60431 355 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 MAGEC1O60732 1142 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 NDUFS2O75306 463 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 GLRA3O75311 464 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 ALDOAP04075 364 aaKnown RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 C2P06681 752 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 DCNP07585 359 aaKnown RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 MAGEA12P43365 314 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 WSCD2Q2TBF2 565 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 TUBB8Q3ZCM7 444 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 ZNF549Q6P9A3 640 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 BANPQ8N9N5 519 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 DENND6BQ8NEG7 585 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 KCNJ9Q92806 393 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 APOPT1Q96IL0 206 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 ZNF514Q96K75 400 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 BIRC8Q96P09 236 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 KLF6Q99612 283 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 PCED1AQ9H1Q7 454 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 EPHX3Q9H6B9 360 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 CAB39LQ9H9S4 337 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 GPAMQ9HCL2 828 aa15.09■□□□□ 0.01
TRIM28-209ENST00000597423 PHPT1Q9NRX4 125 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 TRMT6Q9UJA5 497 aaKnown RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 ZFR2Q9UPR6 939 aaKnown RBP15.09■□□□□ 0.01
TRIM28-209ENST00000597423 TMEM120BA0PK00 339 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 FADS2P1A8MWK0 482 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 FPGTO14772 594 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 POLR3GO15318 223 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 SPAG7O75391 227 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 FDXRP22570 491 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 AKT2P31751 481 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 ACSL1P33121 698 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 CCNFP41002 786 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 TMEM115Q12893 351 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 PDE1CQ14123 709 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 ZKSCAN8Q15776 578 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 FAM83EQ2M2I3 478 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 TSNAXIP1Q2TAA8 658 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 TTLL9Q3SXZ7 439 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 USP39Q53GS9 565 aaKnown RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 RBM20Q5T481 1227 aaKnown RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 AGAP9Q5VTM2 703 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 KIAA0895LQ68EN5 471 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 KLC3Q6P597 504 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 SLC36A4Q6YBV0 504 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 KDM7AQ6ZMT4 941 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 SH2D5Q6ZV89 423 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 NKAPQ8N5F7 415 aaKnown RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 INPP5DQ92835 1189 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 TOE1Q96GM8 510 aaKnown RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 SPACA7Q96KW9 195 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 NECAB3Q96P71 396 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 FAM126AQ9BYI3 521 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 SPATS2LQ9NUQ6 558 aaKnown RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 PCMTD2Q9NV79 361 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 SPATA6Q9NWH7 488 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 WSB2Q9NYS7 404 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.08■□□□□ 0
TRIM28-209ENST00000597423 CYP8B1Q9UNU6 501 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 DMTF1Q9Y222 760 aa15.08■□□□□ 0
TRIM28-209ENST00000597423 FOXO6A8MYZ6 492 aa15.07■□□□□ 0
TRIM28-209ENST00000597423 GPR89AB7ZAQ6 455 aa15.07■□□□□ 0
TRIM28-209ENST00000597423 TOR1BO14657 336 aa15.07■□□□□ 0
TRIM28-209ENST00000597423 INPP4BO15327 924 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms