RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GPR33Q49SQ1 333 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 CERCAMQ5T4B2 595 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 GUSBP11Q6P575 273 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 NLRP9Q7RTR0 991 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 TMPRSS7Q7RTY8 843 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 EFL1Q7Z2Z2 1120 aaKnown RBP14.85□□□□□ -0.03
UPF1-202ENST00000594243 SNX20Q7Z614 316 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 LRRTM4Q86VH4 590 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 TMPRSS12Q86WS5 348 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 CREG2Q8IUH2 290 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 DDHD1Q8NEL9 900 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 ZDHHC1Q8WTX9 485 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 ULK4Q96C45 1275 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 CDKN2AIPNLQ96HQ2 116 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 CAPZA3Q96KX2 299 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 CRLS1Q9UJA2 301 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 RIMKLBQ9ULI2 386 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 PRKAB1Q9Y478 270 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 PLEKHM1Q9Y4G2 1056 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 NEUROG3Q9Y4Z2 214 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 AGAP14A8MT82 685 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 B4DGG1 531 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 KCNJ13O60928 360 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 MTX2O75431 263 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 ECEL1O95672 775 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 TOP3BO95985 862 aaKnown RBP14.84□□□□□ -0.03
UPF1-202ENST00000594243 PNLIPP16233 465 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 GLB1P16278 677 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 MSH3P20585 1137 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 ITGALP20701 1170 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 CASQ1P31415 396 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 MC4RP32245 332 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 ETF1P62495 437 aaKnown RBP14.84□□□□□ -0.03
UPF1-202ENST00000594243 C14orf28Q4W4Y0 310 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 GPRC6AQ5T6X5 926 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 LRRC8BQ6P9F7 803 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 KYQ8NBH2 561 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 HEXDCQ8WVB3 486 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 PEX13Q92968 403 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 DNAJC1Q96KC8 554 aaKnown RBP14.84□□□□□ -0.03
UPF1-202ENST00000594243 RUNDC3BQ96NL0 473 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 BFARQ9NZS9 450 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 NEU2Q9Y3R4 380 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 ST14Q9Y5Y6 855 aa14.84□□□□□ -0.03
UPF1-202ENST00000594243 DNMT3AQ9Y6K1 912 aaPredicted RBP14.84□□□□□ -0.03
UPF1-202ENST00000594243 PCNX2A6NKB5 2137 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 ZW10O43264 779 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 NOBOXO60393 691 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 RALBP11234 206 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 ACP5P13686 325 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 JUPP14923 745 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 VCLP18206 1134 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 PSMA3P25788 255 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 AKT1P31749 480 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 VPS41P49754 854 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 CLCNKAP51800 687 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 BIRC2Q13490 618 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 PPP1R7Q15435 360 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 INSCQ1MX18 579 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 KHDC1Q4VXA5 237 aaKnown RBP14.83□□□□□ -0.04
UPF1-202ENST00000594243 CCDC38Q502W7 563 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 ZRANB3Q5FWF4 1079 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 PCID2Q5JVF3 399 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 CACTIN-AS1Q8N1I8 211 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 PPHLN1Q8NEY8 458 aaKnown RBP14.83□□□□□ -0.04
UPF1-202ENST00000594243 WDR48Q8TAF3 677 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 MAPK15Q8TD08 544 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 DCUN1D1Q96GG9 259 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 ZNF514Q96K75 400 aaPredicted RBP14.83□□□□□ -0.04
UPF1-202ENST00000594243 IL22Q9GZX6 179 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 LRIT1Q9P2V4 623 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 PCYOX1Q9UHG3 505 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 KLK13Q9UKR3 277 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 MSRB2Q9Y3D2 182 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 PCYT1BQ9Y5K3 369 aaPredicted RBP14.83□□□□□ -0.04
UPF1-202ENST00000594243 CACNA1BQ00975 2339 aa14.83□□□□□ -0.04
UPF1-202ENST00000594243 SCN8AQ9UQD0 1980 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 CFAP99D6REC4 459 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 CCDC188H7C350 402 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 GPR39O43194 453 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 NUDT21O43809 227 aaKnown RBP14.82□□□□□ -0.04
UPF1-202ENST00000594243 OPA1O60313 960 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 SLC2A4P14672 509 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 ZNF7P17097 686 aaPredicted RBP14.82□□□□□ -0.04
UPF1-202ENST00000594243 SPINK2P20155 84 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 MAGEA6P43360 314 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 SESN2P58004 480 aaPredicted RBP14.82□□□□□ -0.04
UPF1-202ENST00000594243 INSM1Q01101 510 aaPredicted RBP14.82□□□□□ -0.04
UPF1-202ENST00000594243 CACNG1Q06432 222 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 HLTFQ14527 1009 aaKnown RBP eCLIP14.82□□□□□ -0.04
UPF1-202ENST00000594243 KCNJ11Q14654 390 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 PERM1Q5SV97 790 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 TSTD2Q5T7W7 516 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 TMEM220Q6QAJ8 160 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 CRTC3Q6UUV7 619 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 C17orf82Q86X59 251 aaPredicted RBP14.82□□□□□ -0.04
UPF1-202ENST00000594243 TRAPPC5Q8IUR0 188 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 NAGSQ8N159 534 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 NXPE1Q8N323 547 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 C17orf53Q8N3J3 647 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms