RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SDF2L1Q9HCN8 221 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 ZFP57Q9NU63 452 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 TAAR2Q9P1P5 351 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 TCF20Q9UGU0 1960 aaKnown RBP6.11□□□□□ -1.43
SS18-214ENST00000580003 MYO1GB0I1T2 1018 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 GPC4O75487 556 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 KCNK5O95279 499 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 ICAM1P05362 532 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 HOXA1P49639 335 aaPredicted RBP6.1□□□□□ -1.43
SS18-214ENST00000580003 EIF4A2Q14240 407 aaKnown RBP6.1□□□□□ -1.43
SS18-214ENST00000580003 KRTCAP3Q53RY4 240 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 CCDC30Q5VVM6 783 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 SNX30Q5VWJ9 437 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 FAM171BQ6P995 826 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 TMEM154Q6P9G4 183 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 KLHL35Q6PF15 583 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 IKBIPQ70UQ0 350 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 CCDC190Q86UF4 302 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 NFE4Q86UQ8 179 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 LRRC8CQ8TDW0 803 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 EGLN2Q96KS0 407 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 SMC6Q96SB8 1091 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 TRMT61BQ9BVS5 477 aaKnown RBP6.1□□□□□ -1.43
SS18-214ENST00000580003 EPB41L5Q9HCM4 733 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 TCP11L1Q9NUJ3 509 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 HCFC1R1Q9NWW0 138 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 POLG2Q9UHN1 485 aa6.1□□□□□ -1.43
SS18-214ENST00000580003 PGPEP1LA6NFU8 196 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 MAP2K7O14733 419 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 ACADMP11310 421 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 RARGP13631 454 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 MARK3P27448 753 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 SREBF2Q12772 1141 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 CRYMQ14894 314 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 GKAP1Q5VSY0 366 aaPredicted RBP6.09□□□□□ -1.43
SS18-214ENST00000580003 GFI1BQ5VTD9 330 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 NSUN5P2Q63ZY6 315 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 LCN10Q6JVE6 187 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 FAM180BQ6P0A1 224 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 ZNF852Q6ZMS4 543 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 SLC26A9Q7LBE3 791 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 TICAM1Q8IUC6 712 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 TEX11Q8IYF3 940 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 EMC1Q8N766 993 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 PPP4R1Q8TF05 950 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 MOAP1Q96BY2 351 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 EVI5LQ96CN4 794 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 LINGO1Q96FE5 620 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 CMTM3Q96MX0 182 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 NUDCD1Q96RS6 583 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 ITPAQ9BY32 194 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 ZNF334Q9HCZ1 680 aaPredicted RBP6.09□□□□□ -1.43
SS18-214ENST00000580003 MTMR10Q9NXD2 777 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 FAF1Q9UNN5 650 aaPredicted RBP6.09□□□□□ -1.43
SS18-214ENST00000580003 LYVE1Q9Y5Y7 322 aa6.09□□□□□ -1.43
SS18-214ENST00000580003 ZCWPW2A0A1B0GU75 182 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 PI4KAP2A4QPH2 592 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 EIF3DO15371 548 aaKnown RBP eCLIP6.08□□□□□ -1.44
SS18-214ENST00000580003 USO1O60763 962 aaKnown RBP6.08□□□□□ -1.44
SS18-214ENST00000580003 ACTN1P12814 892 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 ZNF23P17027 643 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 NR2F2P24468 414 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 MMP14P50281 582 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 GAGE5Q13069 117 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 GAGE6Q13070 117 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 SIRPB2Q5JXA9 342 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 C19orf48Q6RUI8 117 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 RAD9BQ6WBX8 426 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 MEX3BQ6ZN04 569 aaKnown RBP6.08□□□□□ -1.44
SS18-214ENST00000580003 TMTC2Q8N394 836 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 OR52I2Q8NH67 350 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 NR4A3Q92570 626 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 FAM118AQ9NWS6 357 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 SESN1Q9Y6P5 492 aa6.08□□□□□ -1.44
SS18-214ENST00000580003 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 OR5K3A6NET4 321 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 OGG1O15527 345 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 BUD23O43709 281 aaKnown RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 HS6ST1O60243 411 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 SLC22A3O75751 556 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 SP1P08047 785 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 CD53P19397 219 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 ANXA7P20073 488 aaKnown RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 ANOS1P23352 680 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 ARF3P61204 181 aaPredicted RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 ARF1P84077 181 aaKnown RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 PCGF3Q3KNV8 242 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 TSPAN33Q86UF1 283 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 PM20D2Q8IYS1 436 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 ANKRD52Q8NB46 1076 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 SLC24A4Q8NFF2 622 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 SCFD2Q8WU76 684 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 USP6NLQ92738 828 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 PHF21AQ96BD5 680 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 ELMOD3Q96FG2 381 aa6.07□□□□□ -1.44
SS18-214ENST00000580003 EIF2B3Q9NR50 452 aaKnown RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 MAP3K20Q9NYL2 800 aaKnown RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 MARCH4Q9P2E8 410 aaPredicted RBP6.07□□□□□ -1.44
SS18-214ENST00000580003 RUSC2Q8N2Y8 1516 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 ANKRD66B4E2M5 251 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms