RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CTSL3PQ5NE16 218 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 TXNDC11Q6PKC3 985 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 ADGRG5Q8IZF4 528 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 SIDT2Q8NBJ9 832 aaKnown RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 VPS33AQ96AX1 596 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 MYRFLQ96LU7 910 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 HAUS8Q9BT25 410 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 TRIM54Q9BYV2 358 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 FKBPLQ9UIM3 349 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 PCDHGC4Q9Y5F7 938 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 NIPSNAP2O75323 286 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 ALDH2P05091 517 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 COL6A1P12109 1028 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 CD9P21926 228 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 OXTRP30559 389 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 SLC11A1P49279 550 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 SMARCB1Q12824 385 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 ALDH16A1Q8IZ83 802 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 LPCAT1Q8NF37 534 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 OR2T11Q8NH01 316 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 CASD1Q96PB1 797 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 CCT7Q99832 543 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 HGH1Q9BTY7 390 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 BRINP2Q9C0B6 783 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 CAAP1Q9H8G2 361 aa22.59■■□□□ 1.21
VPS53-211ENST00000571805 AGO1Q9UL18 857 aaKnown RBP22.59■■□□□ 1.21
VPS53-211ENST00000571805 VPS26AO75436 327 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 GJB5O95377 273 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 MLYCDO95822 493 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 IL10P22301 178 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ALDH3B2P48448 385 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 SLC11A2P49281 568 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 SGSHP51688 502 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 SREBF2Q12772 1141 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 PAGE3Q5JUK9 113 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 KRT80Q6KB66 452 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 FUT10Q6P4F1 479 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 RNF180Q86T96 592 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 CBR4Q8N4T8 237 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 EEF1AKMT1Q8WVE0 214 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ASB1Q9Y576 335 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 RAI2Q9Y5P3 530 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ANKRD12Q6UB98 2062 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 FAM149AA5PLN7 773 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 CLDN11O75508 207 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ASLP04424 464 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 PSMA4P25789 261 aaKnown RBP22.58■■□□□ 1.21
VPS53-211ENST00000571805 MC4RP32245 332 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 KCNK10P57789 538 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 UFM1P61960 85 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 NFYCQ13952 458 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 RABL3Q5HYI8 236 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 SCIMPQ6UWF3 145 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 TAS1R1Q7RTX1 841 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 EFL1Q7Z2Z2 1120 aaKnown RBP22.58■■□□□ 1.21
VPS53-211ENST00000571805 CAMK1DQ8IU85 385 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 DENND1CQ8IV53 801 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 CMTR2Q8IYT2 770 aaKnown RBP22.58■■□□□ 1.21
VPS53-211ENST00000571805 DNAJB14Q8TBM8 379 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 CD200R1Q8TD46 325 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ESAMQ96AP7 390 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ACOX2Q99424 681 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 VPS9D1Q9Y2B5 631 aa22.58■■□□□ 1.21
VPS53-211ENST00000571805 ILVBLA1L0T0 632 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 ANKRD33BA6NCL7 494 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 EEDO75530 441 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 KLKB1P03952 638 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 CDH2P19022 906 aaPredicted RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 TTPAP49638 278 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 GSK3BP49841 420 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 PTPRRQ15256 657 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 PTRH1Q86Y79 214 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 ABI1Q8IZP0 508 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 RMND5BQ96G75 393 aaPredicted RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 HIC2Q96JB3 615 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 ANKRD66B4E2M5 251 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 PDLIM1O00151 329 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 E2F3O00716 465 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 FASP25445 335 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 TM4SF4P48230 202 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 FIBCD1Q8N539 461 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 TRIML2Q8N7C3 387 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 TRPV3Q8NET8 790 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 DIS3LQ8TF46 1054 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 C2orf15Q8WU43 125 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 CDK5RAP1Q96SZ6 601 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 SMOXQ9NWM0 555 aa22.57■■□□□ 1.2
VPS53-211ENST00000571805 TRMT6Q9UJA5 497 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 ZFC3H1O60293 1989 aaKnown RBP22.57■■□□□ 1.2
VPS53-211ENST00000571805 NT5C1B-RDH14C9J2C7 533 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 SLC22A3O75751 556 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 RHOCP08134 193 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 CES1P23141 567 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 SLC5A2P31639 672 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 CCT8P50990 548 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 CLCN4P51793 760 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 IL2P60568 153 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 PLOD1Q02809 727 aaPredicted RBP22.56■■□□□ 1.2
VPS53-211ENST00000571805 RBBP7Q16576 425 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 GPSM1Q86YR5 675 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms